Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   A6J38_RS05255 Genome accession   NZ_CP020411
Coordinates   1077157..1077822 (+) Length   221 a.a.
NCBI ID   WP_013527272.1    Uniprot ID   A0ABY1VR37
Organism   Haemophilus influenzae strain FDAARGOS_199     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1072157..1082822
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J38_RS05230 (A6J38_05225) crp 1073696..1074370 (-) 675 WP_005647998.1 cAMP-activated global transcriptional regulator CRP Regulator
  A6J38_RS05235 (A6J38_05230) - 1074355..1074606 (-) 252 WP_005647999.1 YheU family protein -
  A6J38_RS05240 (A6J38_05235) slmA 1074628..1075284 (-) 657 WP_005648000.1 nucleoid occlusion factor SlmA -
  A6J38_RS05245 (A6J38_05240) dut 1075288..1075743 (-) 456 WP_005631431.1 dUTP diphosphatase -
  A6J38_RS05250 (A6J38_05245) coaBC 1075791..1076993 (-) 1203 WP_005693302.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  A6J38_RS05255 (A6J38_05250) radC 1077157..1077822 (+) 666 WP_013527272.1 DNA repair protein RadC Machinery gene
  A6J38_RS05260 (A6J38_05255) rpmB 1078036..1078272 (+) 237 WP_005542826.1 50S ribosomal protein L28 -
  A6J38_RS05265 (A6J38_05260) rpmG 1078284..1078454 (+) 171 WP_005613503.1 50S ribosomal protein L33 -
  A6J38_RS05270 (A6J38_05265) - 1078802..1080166 (+) 1365 WP_005693298.1 diaminobutyrate--2-oxoglutarate transaminase -
  A6J38_RS05275 (A6J38_05270) vapB2 1080313..1080546 (+) 234 WP_005648011.1 type II toxin-antitoxin system antitoxin VapB2 -
  A6J38_RS05280 (A6J38_05275) vapC 1080546..1080944 (+) 399 WP_005651560.1 tRNA(fMet)-specific endonuclease VapC -
  A6J38_RS05285 (A6J38_05280) ddc 1080964..1082499 (+) 1536 WP_005693296.1 L-2,4-diaminobutyrate decarboxylase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24969.23 Da        Isoelectric Point: 6.5991

>NTDB_id=185754 A6J38_RS05255 WP_013527272.1 1077157..1077822(+) (radC) [Haemophilus influenzae strain FDAARGOS_199]
MENNDELMPREKLLAFGAKALSDYELLAIFLRTGIKGCPVMSLSKNVLTHFGSLHALLSADKKAFCSVKGLGITQFIQLQ
AITEMTKRYLKQDMLSTPIINDPETVKLFLLTELQHEEREVFMVLFLDNQHRLIKKERLFLGTINVSAVYPREIIKEALY
CNAAALILAHNHPSGITEPSYSDQLITKKIQDAAELMEIRVLDHLIVGKSDCYSFAENCLL

Nucleotide


Download         Length: 666 bp        

>NTDB_id=185754 A6J38_RS05255 WP_013527272.1 1077157..1077822(+) (radC) [Haemophilus influenzae strain FDAARGOS_199]
ATGGAAAACAATGATGAATTAATGCCACGGGAAAAATTGCTGGCATTTGGAGCAAAAGCATTAAGTGATTATGAACTACT
TGCGATTTTTTTACGTACTGGTATCAAAGGTTGTCCTGTTATGTCACTTTCTAAAAATGTATTAACGCATTTTGGCTCCT
TGCACGCTTTACTTTCTGCAGATAAAAAAGCTTTCTGTTCTGTAAAAGGCTTAGGTATTACGCAATTTATTCAACTGCAA
GCGATTACGGAAATGACCAAGCGTTATTTAAAGCAAGATATGTTAAGTACGCCGATTATTAATGATCCTGAAACAGTAAA
ACTTTTTTTACTCACTGAATTGCAACACGAGGAAAGAGAAGTATTTATGGTTTTATTTTTAGATAATCAACATCGTTTGA
TTAAAAAAGAGCGGTTATTTTTAGGTACAATTAATGTATCAGCGGTCTATCCGCGAGAAATTATTAAAGAAGCACTCTAT
TGTAATGCGGCAGCTTTAATTTTGGCACATAATCATCCTTCAGGTATAACGGAGCCGAGTTATTCGGATCAGCTTATTAC
TAAAAAAATTCAAGATGCGGCTGAACTAATGGAAATTCGCGTGCTTGATCATTTAATTGTAGGGAAAAGCGATTGTTATT
CTTTCGCGGAGAATTGTTTATTATAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(100-218)

UPF0758 N-terminal (UPF0758_N)

(8-74)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

99.095

100

0.991
  radC Streptococcus pneumoniae TIGR4

37.674

97.285

0.367
  radC Streptococcus pneumoniae R6

37.209

97.285

0.362
  radC Streptococcus pneumoniae D39

37.209

97.285

0.362