Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   A6J38_RS01275 Genome accession   NZ_CP020411
Coordinates   262466..264547 (+) Length   693 a.a.
NCBI ID   WP_005693902.1    Uniprot ID   -
Organism   Haemophilus influenzae strain FDAARGOS_199     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 257466..269547
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J38_RS01255 (A6J38_01255) gap 257949..258968 (-) 1020 WP_005646416.1 type I glyceraldehyde-3-phosphate dehydrogenase -
  A6J38_RS01260 (A6J38_01260) gmk 259219..259845 (+) 627 WP_005693898.1 guanylate kinase -
  A6J38_RS01265 (A6J38_01265) rpoZ 259908..260174 (+) 267 WP_005693900.1 DNA-directed RNA polymerase subunit omega -
  A6J38_RS01270 (A6J38_01270) spoT 260355..262469 (+) 2115 WP_005693901.1 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase -
  A6J38_RS01275 (A6J38_01275) recG 262466..264547 (+) 2082 WP_005693902.1 ATP-dependent DNA helicase RecG Machinery gene
  A6J38_RS01280 (A6J38_01280) murI 264577..265386 (+) 810 WP_005693903.1 glutamate racemase -
  A6J38_RS01285 (A6J38_01285) lldD 265598..266743 (+) 1146 WP_005693904.1 FMN-dependent L-lactate dehydrogenase LldD -

Sequence

Protein


Download         Length: 693 a.a.        Molecular weight: 78085.71 Da        Isoelectric Point: 8.7507

>NTDB_id=185735 A6J38_RS01275 WP_005693902.1 262466..264547(+) (recG) [Haemophilus influenzae strain FDAARGOS_199]
MSLELLDAVPLTSLSGVGAAISNKLAKIGIHNLQDLLFHLPIRYEDRTRITLIANLRPEQYFTIEGIVQTCEVAFGRRPI
LSVSLSDGTSKIMLRFFNFNAGMRNSFQVGVRVKAFGEVKRGRHMPEIHHPEYQIVRDNAPIVLEETLTPIYSTTEGLKQ
NSLRKLTDQALALLDKVQIAEILPNEFNPHQYSLKEALRLLHRPPPDISLEMLEQGKHPAQQRLIFEELLAHNLAMQKVR
LGTQQFSALPLHYQTDLKQRFLATLPFQPTNAQKRVVSDIEQDLIKDYPMMRLVQGDVGSGKTLVAALAALTAIDNGKQV
ALMAPTEILAEQHANNFRRWFKPFGIEVGWLAGKVKGKSRQAELEKIKTGAVQMVVGTHALFQEEVEFSDLALVIIDEQH
RFGVHQRLMLREKGEKAGFYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVVVSEERRAEIVMRVKNACV
NEKRQAYWVCTLIDESEVLEAQAAEAIWEDLTKALPMLNIGLVHGRMKPQEKQDVMMRFKNAELDLLVATTVIEVGVDVP
NASLMIIENAERLGLSQLHQLRGRVGRGCTASFCVLMYKPPLGKVSQKRLQVLRDSQDGFVISEKDLEIRGPGEVLGTKQ
TGIAELRVANLMRDRKMIPTVQHYAKSLIQKYPDVAESLIRRWLNNKEIYSNA

Nucleotide


Download         Length: 2082 bp        

>NTDB_id=185735 A6J38_RS01275 WP_005693902.1 262466..264547(+) (recG) [Haemophilus influenzae strain FDAARGOS_199]
ATGAGCCTTGAACTTCTCGATGCCGTGCCTTTGACCAGCCTTTCTGGTGTGGGGGCTGCCATTTCTAATAAACTGGCTAA
AATCGGCATTCATAATCTGCAAGATTTACTCTTTCATTTACCTATTCGCTATGAAGATCGTACGCGAATTACGCTAATCG
CTAATCTCCGCCCCGAACAATATTTTACCATTGAAGGAATTGTACAAACCTGTGAAGTCGCTTTTGGCCGTCGCCCGATT
TTATCGGTAAGTTTGTCAGACGGCACATCGAAAATTATGTTACGTTTTTTCAATTTTAATGCGGGAATGCGTAATAGTTT
TCAAGTTGGCGTGCGAGTAAAGGCTTTTGGCGAAGTGAAACGTGGGCGTCACATGCCAGAAATTCATCATCCAGAATATC
AAATTGTGCGAGATAATGCGCCCATAGTATTGGAAGAAACCCTAACGCCGATTTATTCCACAACGGAAGGGCTAAAACAA
AATTCATTACGAAAATTAACGGATCAGGCTTTGGCATTACTCGACAAAGTTCAGATTGCAGAAATTTTGCCTAATGAATT
TAATCCACATCAATATAGCTTAAAAGAGGCATTGCGATTATTGCATCGTCCGCCGCCAGATATTTCATTAGAAATGTTAG
AGCAAGGTAAGCATCCTGCACAACAACGATTAATTTTTGAAGAGCTTCTGGCACATAATTTAGCTATGCAAAAAGTGCGG
TTAGGAACGCAACAATTTTCTGCCTTACCGCTACATTATCAAACAGATTTGAAACAGCGATTTTTAGCCACCTTGCCATT
TCAACCCACTAATGCGCAAAAGCGAGTAGTGTCCGATATTGAACAAGATCTTATCAAAGATTATCCGATGATGCGCTTAG
TGCAAGGCGATGTGGGCTCGGGAAAAACATTGGTTGCCGCATTGGCTGCTTTAACTGCAATTGATAATGGCAAACAAGTC
GCCTTAATGGCGCCAACAGAAATTCTTGCAGAACAGCATGCGAATAATTTTAGACGGTGGTTTAAGCCTTTCGGTATTGA
AGTTGGCTGGTTGGCAGGTAAAGTAAAAGGAAAATCAAGACAAGCAGAGCTTGAAAAAATCAAAACTGGCGCGGTGCAAA
TGGTGGTGGGGACGCATGCTTTATTCCAAGAAGAAGTCGAGTTTTCCGACTTAGCATTAGTGATTATTGATGAACAACAT
CGTTTTGGGGTGCATCAACGATTAATGTTGCGTGAAAAAGGCGAAAAAGCGGGATTTTATCCCCATCAGTTAATTATGAC
GGCCACGCCGATTCCGAGAACGTTGGCAATGACCGTATATGCAGATTTGGATACATCAATTATTGATGAATTGCCTCCAG
GTCGTACGCCGATAACAACCGTAGTGGTTTCTGAAGAACGTCGAGCTGAAATTGTGATGCGTGTAAAAAACGCTTGTGTT
AATGAAAAACGTCAAGCCTATTGGGTGTGTACGTTAATTGATGAATCAGAGGTGTTAGAAGCTCAAGCAGCTGAAGCGAT
TTGGGAAGATTTAACGAAAGCGTTACCGATGTTAAATATTGGTTTAGTGCACGGGCGCATGAAACCCCAAGAAAAACAAG
ATGTCATGATGCGTTTTAAAAATGCAGAATTGGATTTATTGGTGGCAACGACAGTCATCGAAGTGGGTGTTGATGTTCCG
AATGCGAGTTTGATGATTATCGAAAATGCAGAACGTTTAGGTTTATCGCAGCTTCATCAGTTACGAGGGCGCGTCGGTCG
AGGCTGCACGGCTTCTTTTTGTGTACTAATGTATAAACCTCCGCTAGGTAAAGTTTCACAAAAACGCTTGCAGGTGCTAC
GAGATAGCCAAGATGGGTTTGTTATTTCGGAAAAAGATTTAGAAATTCGTGGGCCAGGTGAAGTACTTGGAACGAAACAA
ACGGGAATTGCTGAATTGCGAGTAGCAAATTTAATGCGAGATAGAAAAATGATACCAACGGTGCAACATTATGCGAAATC
ACTTATCCAAAAATACCCTGATGTGGCAGAAAGCCTAATCCGTCGCTGGCTCAATAATAAAGAAATTTACTCGAACGCTT
AA

Domains

Predicted by InterProScan.

RecG wedge domain (RecG_wedge)

(15-172)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(617-677)

DEAD/DEAH box helicase (DEAD)

(273-405)

Helicase conserved C-terminal domain (Helicase_C)

(480-588)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

49.481

97.403

0.482
  recG/mmsA Streptococcus pneumoniae R6

39.818

94.949

0.378
  recG/mmsA Streptococcus pneumoniae R36A

39.818

94.949

0.378
  recG Bacillus subtilis subsp. subtilis str. 168

38.955

96.681

0.377