Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   A6J54_RS03870 Genome accession   NZ_CP020402
Coordinates   632176..632625 (+) Length   149 a.a.
NCBI ID   WP_002214937.1    Uniprot ID   Q9JXJ2
Organism   Neisseria meningitidis strain FDAARGOS_215     
Function   DNA binding; DNA uptake; receptor of DNA uptake sequence (DUS) (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 627176..637625
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J54_RS14570 comE 631624..632088 (+) 465 WP_172595944.1 ComEA family DNA-binding protein Machinery gene
  A6J54_RS03870 (A6J54_03735) comP 632176..632625 (+) 450 WP_002214937.1 type IV pilin protein Machinery gene
  A6J54_RS15400 (A6J54_03740) - 632715..633058 (-) 344 Protein_623 5'-nucleotidase -
  A6J54_RS03880 (A6J54_03745) - 633170..633382 (-) 213 WP_002224145.1 SWIM zinc finger domain-containing protein -
  A6J54_RS03890 (A6J54_03755) - 633614..634087 (+) 474 Protein_625 IS5/IS1182 family transposase -
  A6J54_RS03905 (A6J54_03760) - 634493..635548 (+) 1056 WP_024496867.1 DNA cytosine methyltransferase -
  A6J54_RS03910 (A6J54_03765) - 635563..637209 (+) 1647 WP_002237377.1 TIGR02391 family protein -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16834.81 Da        Isoelectric Point: 9.7951

>NTDB_id=185597 A6J54_RS03870 WP_002214937.1 632176..632625(+) (comP) [Neisseria meningitidis strain FDAARGOS_215]
MTDNRGFTLVELISVVLILSVLALIVYPSYRNYVEKAKINAVRAALLENAHFMEKFYLQNGRFKQTSTKWPSLPIKEAEG
FCIRLNGIARGALDSKFMLKAVAIDKDKNPFIIKMNENLVTFICKKSASSCSDGLDYFKGNDKDCKLLK

Nucleotide


Download         Length: 450 bp        

>NTDB_id=185597 A6J54_RS03870 WP_002214937.1 632176..632625(+) (comP) [Neisseria meningitidis strain FDAARGOS_215]
ATGACTGATAATCGGGGGTTTACGCTGGTTGAATTAATATCAGTGGTCTTGATATTGTCTGTACTTGCTTTAATTGTTTA
TCCGAGCTATCGCAATTATGTTGAGAAAGCAAAGATAAATGCAGTGCGGGCAGCCTTGTTAGAAAATGCACATTTTATGG
AAAAGTTTTATCTGCAGAATGGGAGATTTAAACAAACATCTACCAAATGGCCAAGTTTGCCGATTAAAGAGGCAGAAGGC
TTTTGTATCCGTTTGAATGGAATCGCGCGCGGGGCCTTAGACAGTAAATTCATGTTGAAGGCGGTAGCCATAGATAAAGA
TAAAAATCCTTTTATTATTAAGATGAATGAAAATCTAGTAACCTTTATTTGCAAGAAGTCCGCCAGTTCGTGTAGTGACG
GGCTGGATTATTTTAAAGGAAATGATAAGGACTGCAAGTTACTTAAGTAG

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(28-107)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9JXJ2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Neisseria gonorrhoeae MS11

100

100

1
  comP Neisseria meningitidis 8013

99.329

100

0.993
  comP Neisseria subflava NJ9703

49.66

98.658

0.49