Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   A9C19_RS06505 Genome accession   NZ_CP016020
Coordinates   1372810..1373124 (+) Length   104 a.a.
NCBI ID   WP_072579188.1    Uniprot ID   A0A1L3MPX5
Organism   Bacillus weihaiensis strain Alg07     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1367810..1378124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A9C19_RS06470 (A9C19_06330) - 1367954..1368127 (-) 174 WP_072579184.1 DUF2759 domain-containing protein -
  A9C19_RS06475 (A9C19_06335) - 1368352..1368984 (+) 633 WP_072579185.1 MBL fold metallo-hydrolase -
  A9C19_RS06480 (A9C19_06340) - 1369189..1369437 (-) 249 WP_026558763.1 DUF2626 domain-containing protein -
  A9C19_RS06485 (A9C19_06345) - 1369771..1370151 (+) 381 WP_072579186.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  A9C19_RS06495 (A9C19_06355) comGA 1370707..1371774 (+) 1068 WP_099092742.1 competence type IV pilus ATPase ComGA Machinery gene
  A9C19_RS06500 (A9C19_06360) comGB 1371764..1372798 (+) 1035 WP_072579187.1 competence type IV pilus assembly protein ComGB -
  A9C19_RS06505 (A9C19_06365) comGC 1372810..1373124 (+) 315 WP_072579188.1 competence type IV pilus major pilin ComGC Machinery gene
  A9C19_RS06510 (A9C19_06370) comGD 1373102..1373551 (+) 450 WP_072579189.1 competence type IV pilus minor pilin ComGD -
  A9C19_RS21475 (A9C19_06375) comGE 1373538..1373867 (+) 330 WP_072579190.1 competence type IV pilus minor pilin ComGE -
  A9C19_RS06520 (A9C19_06380) comGF 1373809..1374297 (+) 489 WP_072579191.1 competence type IV pilus minor pilin ComGF -
  A9C19_RS06525 (A9C19_06385) comGG 1374287..1374676 (+) 390 WP_072579192.1 competence type IV pilus minor pilin ComGG -
  A9C19_RS06530 (A9C19_06390) - 1374713..1375225 (+) 513 WP_072579193.1 shikimate kinase -
  A9C19_RS06535 (A9C19_06395) - 1375263..1375469 (+) 207 WP_072581772.1 YqzE family protein -
  A9C19_RS06540 (A9C19_06400) - 1375629..1375826 (+) 198 WP_083584306.1 helix-turn-helix transcriptional regulator -
  A9C19_RS06545 (A9C19_06405) - 1375841..1376314 (+) 474 WP_083584307.1 hypothetical protein -
  A9C19_RS06550 (A9C19_06410) - 1376617..1376931 (-) 315 WP_072579195.1 DUF3889 domain-containing protein -
  A9C19_RS21320 sinI 1377205..1377342 (-) 138 WP_099092744.1 DNA-binding anti-repressor SinI -
  A9C19_RS06560 (A9C19_06415) - 1377355..1377705 (-) 351 WP_072579196.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 104 a.a.        Molecular weight: 11143.96 Da        Isoelectric Point: 6.4425

>NTDB_id=185305 A9C19_RS06505 WP_072579188.1 1372810..1373124(+) (comGC) [Bacillus weihaiensis strain Alg07]
MNNEKGFTLIEMLIVLLVISVLLLITIPNVAKHNTNIQSKGCDGLVNMVQAQVTAYEIDHAKKPTMTDLVAANYLKPNQK
CPNGNIIQISANGEVTASAPPSGE

Nucleotide


Download         Length: 315 bp        

>NTDB_id=185305 A9C19_RS06505 WP_072579188.1 1372810..1373124(+) (comGC) [Bacillus weihaiensis strain Alg07]
ATGAATAACGAAAAAGGTTTTACACTCATTGAAATGCTTATCGTATTACTCGTCATATCGGTGTTACTTTTAATTACAAT
CCCAAATGTTGCAAAACATAATACCAATATTCAATCAAAAGGGTGTGACGGTTTAGTAAATATGGTTCAAGCACAAGTTA
CAGCTTATGAAATTGATCATGCTAAGAAGCCAACGATGACCGATTTAGTTGCTGCGAATTACCTCAAGCCAAATCAGAAA
TGCCCTAACGGAAATATTATACAAATATCAGCAAATGGAGAAGTAACAGCAAGTGCGCCACCTTCAGGCGAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1L3MPX5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

61.702

90.385

0.558
  comGC Staphylococcus aureus MW2

49.474

91.346

0.452
  comGC Staphylococcus aureus N315

49.474

91.346

0.452

Multiple sequence alignment