Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   AM483_RS00440 Genome accession   NZ_CP020116
Coordinates   94994..95626 (-) Length   210 a.a.
NCBI ID   WP_000242755.1    Uniprot ID   A0A1C4FZU4
Organism   Escherichia coli strain AR_0104     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 89994..100626
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM483_RS00415 (AM483_00415) yhfG 90126..90293 (+) 168 WP_000736858.1 YhfG family protein -
  AM483_RS00420 (AM483_00420) fic 90283..90885 (+) 603 WP_001280613.1 putative adenosine monophosphate-protein transferase Fic -
  AM483_RS00425 (AM483_00425) pabA 90917..91480 (+) 564 WP_000601853.1 aminodeoxychorismate synthase component 2 -
  AM483_RS00430 (AM483_00430) argD 91566..92786 (+) 1221 WP_000963794.1 bifunctional acetylornithine/succinyldiaminopimelate transaminase -
  AM483_RS00435 (AM483_00435) yhfK 92853..94943 (-) 2091 WP_001296470.1 YccS/YhfK family putative transporter -
  AM483_RS00440 (AM483_00440) crp 94994..95626 (-) 633 WP_000242755.1 cAMP-activated global transcriptional regulator CRP Regulator
  AM483_RS00450 (AM483_00450) yhfA 95928..96332 (+) 405 WP_001148908.1 OsmC family protein -
  AM483_RS00455 (AM483_00455) prkB 96387..97256 (-) 870 WP_001274684.1 phosphoribulokinase -
  AM483_RS00460 (AM483_00460) yheU 97310..97528 (-) 219 WP_000907085.1 YheU family protein -
  AM483_RS00465 (AM483_00465) yheT 97522..98544 (-) 1023 WP_000057364.1 hydrolase -
  AM483_RS00470 (AM483_00470) yheS 98544..100457 (-) 1914 WP_000634830.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23640.43 Da        Isoelectric Point: 8.2710

>NTDB_id=185091 AM483_RS00440 WP_000242755.1 94994..95626(-) (crp) [Escherichia coli strain AR_0104]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=185091 AM483_RS00440 WP_000242755.1 94994..95626(-) (crp) [Escherichia coli strain AR_0104]
ATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAA
GAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAG
ACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGC
CAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGAT
TCAGGTAAACCCGGACATTCTGATGCGTCTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCA
ACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTGAATCTGGCAAAACAACCGGATGCTATGACTCAC
CCGGACGGTATGCAAATCAAAATTACCCGTCAGGAAATCGGTCAGATTGTCGGCTGTTCTCGTGAAACCGTGGGACGCAT
TCTGAAGATGCTGGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C4FZU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

95.714

100

0.957
  crp Haemophilus influenzae Rd KW20

77.941

97.143

0.757
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment