Detailed information NTG0184879

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: A8O17_RS08405
• Genome accession: NZ_CP015975
• Coordinates: 1605879..1606658 (+)
• Length: 259 a.a.
• NCBI ID: WP_003220850.1
• Uniprot ID: G4NSM6
• Organism: Bacillus subtilis subsp. subtilis strain delta6
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 1600879..1611658

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A8O17_RS08385 (A8O17_08385)	trmFO	1601572..1602879 (+)	1308	WP_003244725.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
A8O17_RS08390 (A8O17_08390)	xerC	1602947..1603861 (+)	915	WP_003231988.1	tyrosine recombinase XerC	-
A8O17_RS08395 (A8O17_08395)	clpQ	1603874..1604419 (+)	546	WP_003238555.1	ATP-dependent protease subunit ClpQ	-
A8O17_RS08400 (A8O17_08400)	hslU	1604436..1605839 (+)	1404	WP_003245556.1	HslU--HslV peptidase ATPase subunit	-
A8O17_RS08405 (A8O17_08405)	codY	1605879..1606658 (+)	780	WP_003220850.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
A8O17_RS08410 (A8O17_08410)	flgB	1607038..1607427 (+)	390	WP_003245656.1	flagellar basal body rod protein FlgB	-
A8O17_RS08415 (A8O17_08415)	flgC	1607427..1607879 (+)	453	WP_003245521.1	flagellar basal body rod protein FlgC	-
A8O17_RS08420 (A8O17_08420)	fliE	1607890..1608210 (+)	321	WP_003238544.1	flagellar hook-basal body complex protein FliE	-
A8O17_RS08425 (A8O17_08425)	fliF	1608256..1609866 (+)	1611	WP_010886506.1	flagellar basal-body MS-ring/collar protein FliF	-
A8O17_RS08430 (A8O17_08430)	fliG	1609879..1610895 (+)	1017	WP_003231981.1	flagellar motor switch protein FliG	-
A8O17_RS08435 (A8O17_08435)	fliH	1610888..1611640 (+)	753	WP_003244804.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29013.22 Da
• Isoelectric Point: 4.6514

>NTDB_id=184879 A8O17_RS08405 WP_003220850.1 1605879..1606658(+) (codY) [Bacillus subtilis subsp. subtilis strain delta6]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=184879 A8O17_RS08405 WP_003220850.1 1605879..1606658(+) (codY) [Bacillus subtilis subsp. subtilis strain delta6]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCAATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

• CodY GAF-like domain (CodY) (3-178)

3D structure

• AlphaFold DB: G4NSM6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	100	100	1
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.451	98.456	0.467