Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   Vc3S01_RS16440 Genome accession   NZ_CP020076
Coordinates   3419280..3421361 (+) Length   693 a.a.
NCBI ID   WP_077201181.1    Uniprot ID   -
Organism   Vibrio campbellii strain 20130629003S01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3414280..3426361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Vc3S01_RS16420 (Vc3S01_3033) gmk 3415068..3415691 (+) 624 WP_005430186.1 guanylate kinase -
  Vc3S01_RS16425 (Vc3S01_3034) rpoZ 3415855..3416127 (+) 273 WP_005379346.1 DNA-directed RNA polymerase subunit omega -
  Vc3S01_RS16430 (Vc3S01_3035) spoT 3416167..3418287 (+) 2121 WP_005434453.1 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase -
  Vc3S01_RS16435 (Vc3S01_3036) trmH 3418341..3419024 (+) 684 WP_005430068.1 tRNA (guanosine(18)-2'-O)-methyltransferase TrmH -
  Vc3S01_RS16440 (Vc3S01_3037) recG 3419280..3421361 (+) 2082 WP_077201181.1 ATP-dependent DNA helicase RecG Machinery gene
  Vc3S01_RS16445 (Vc3S01_3038) - 3421596..3423581 (+) 1986 WP_054823136.1 S9 family peptidase -
  Vc3S01_RS16450 (Vc3S01_3039) - 3423834..3425225 (+) 1392 WP_009698969.1 uracil-xanthine permease family protein -

Sequence

Protein


Download         Length: 693 a.a.        Molecular weight: 76696.59 Da        Isoelectric Point: 7.9770

>NTDB_id=184535 Vc3S01_RS16440 WP_077201181.1 3419280..3421361(+) (recG) [Vibrio campbellii strain 20130629003S01]
MSAQMLSAVPLTSLSGVGAKVAEKLAKVGLHSVQDLLFHLPLRYEDRTRIYPIAKLHAGLWAAVQGKVMAVDTTFGKRKM
LTVKISDGNGTITLRFFNFTAAMKNNFSNGKLVHAYGEIKRGGMGLEIVHPDYKFYVSEQKPDVEQSLTPVYPTTDGLRQ
ITLRNLTEQALSLLDKAAVQELLPSGLYNHQITMSQALHTIHRPPPTINLDEFDEGKHPAQIRLIMEELLAQNLSMLAVR
SKGQQDVALPLASCHSLKKQLLAQLPFSPTNAQARVVKEIEADLEKTHPMMRLVQGDVGSGKTLVAALAAVRAIEHGYQV
ALMAPTELLAEQHAINFANWFENMGIQVGWLAGKLKGKAKEAELARIASGEAQMVVGTHALFQEHVEFHHLALVIIDEQH
RFGVHQRLELREKGAKQGAYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDDIVERVRNACL
NEGKQAYWVCTLIDESEVLEAQAAADTAEELQRKLPDVKIGLVHGRMKPAEKQAVMQDFKDNKLHLLVATTVIEVGVDVP
NSSLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLLYHSPLSKTAQKRLGVLRESNDGFVIAQKDLEIRGPGELLGTKQ
TGLADFKIADLVRDQRLIPEVQRIARYIHDNYPTNATAIIDRWLGERDIYSKA

Nucleotide


Download         Length: 2082 bp        

>NTDB_id=184535 Vc3S01_RS16440 WP_077201181.1 3419280..3421361(+) (recG) [Vibrio campbellii strain 20130629003S01]
ATGTCTGCCCAAATGTTATCTGCTGTTCCTTTAACTTCTCTGTCTGGAGTTGGCGCTAAAGTCGCAGAAAAACTCGCCAA
AGTTGGTTTGCATAGCGTTCAAGATCTTCTGTTTCATCTTCCTCTTCGTTACGAAGATCGCACTCGCATTTACCCAATCG
CCAAACTGCATGCCGGACTTTGGGCGGCGGTACAGGGCAAAGTCATGGCTGTCGATACTACTTTCGGCAAACGCAAAATG
CTGACGGTAAAGATCAGCGACGGCAATGGCACCATTACCCTACGCTTTTTTAACTTTACTGCCGCGATGAAGAACAATTT
CTCGAATGGTAAGTTAGTACACGCTTACGGTGAAATTAAGCGTGGCGGTATGGGCTTAGAAATTGTTCACCCTGACTACA
AGTTTTATGTAAGTGAACAAAAGCCGGATGTGGAACAAAGCTTAACCCCCGTTTATCCAACCACCGATGGGTTACGTCAA
ATCACTTTGCGTAACCTGACGGAACAAGCCTTATCACTCCTCGATAAAGCCGCAGTGCAAGAGTTGCTGCCTTCTGGTTT
ATACAATCACCAGATCACTATGTCGCAGGCGCTGCATACGATTCATCGACCACCTCCAACCATTAATTTGGATGAGTTTG
ATGAAGGTAAACACCCTGCTCAAATTCGTTTGATCATGGAAGAATTACTGGCGCAGAACCTCTCTATGTTGGCAGTGCGC
AGCAAAGGACAACAAGACGTTGCATTACCTTTAGCGTCGTGTCACTCACTGAAAAAACAACTACTGGCTCAATTGCCCTT
CTCGCCGACCAATGCTCAAGCACGAGTGGTTAAAGAAATTGAAGCTGACTTAGAAAAAACGCACCCAATGATGCGCCTTG
TTCAAGGTGACGTAGGCTCGGGGAAAACTCTAGTTGCTGCGCTTGCTGCCGTCAGAGCCATTGAACACGGCTATCAAGTC
GCTTTAATGGCACCGACCGAGCTGCTCGCCGAACAGCACGCGATTAACTTCGCTAATTGGTTTGAGAACATGGGCATTCA
AGTCGGTTGGCTGGCGGGCAAATTAAAAGGTAAAGCCAAAGAAGCCGAATTGGCGCGTATTGCCAGTGGTGAAGCGCAAA
TGGTCGTGGGCACTCACGCCCTCTTCCAAGAACATGTTGAGTTCCATCATCTTGCTTTGGTCATTATTGATGAACAGCAC
CGCTTTGGTGTCCACCAGCGCTTAGAGCTACGCGAGAAAGGCGCGAAACAAGGCGCTTATCCGCACCAGCTCATCATGAC
AGCAACGCCAATTCCGCGAACATTAGCCATGACAGCTTATGCTGACTTAGAAACGTCGGTGATTGATGAATTACCGCCAG
GTCGAACACCAATCCAGACCGTCGCGATTCCAGACACTAAGCGTGATGATATCGTCGAACGAGTACGCAATGCCTGCTTA
AACGAAGGCAAACAAGCGTATTGGGTGTGTACCTTAATTGATGAATCCGAAGTACTGGAAGCCCAAGCTGCGGCGGATAC
GGCAGAAGAGCTGCAACGTAAACTGCCTGACGTAAAAATTGGTCTAGTGCACGGACGAATGAAGCCCGCAGAAAAACAAG
CGGTGATGCAGGATTTCAAAGACAACAAGCTGCATTTGCTGGTCGCAACTACGGTGATTGAAGTGGGCGTGGACGTGCCC
AATTCCAGTTTGATGATCATCGAGAACCCAGAGCGCTTAGGTTTAGCTCAGTTGCATCAGCTTAGAGGTCGTGTTGGTCG
AGGTTCAGTGGCGAGCCATTGTGTGTTGTTGTATCACTCACCACTATCAAAAACCGCCCAAAAACGTTTAGGCGTATTAC
GTGAAAGCAACGACGGCTTTGTGATTGCACAGAAAGACTTAGAGATTCGTGGACCGGGTGAGCTTCTTGGTACCAAACAA
ACTGGCTTGGCAGATTTTAAAATTGCCGACTTAGTGCGAGATCAGCGCTTGATTCCGGAAGTTCAACGCATCGCGCGTTA
CATTCATGACAACTACCCAACGAATGCGACAGCAATTATTGACCGTTGGTTAGGTGAGCGTGACATTTACTCTAAGGCGT
AA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(271-433)

RecG wedge domain (RecG_wedge)

(15-172)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(617-675)

Helicase conserved C-terminal domain (Helicase_C)

(480-588)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

49.554

96.97

0.481
  recG/mmsA Streptococcus pneumoniae R6

39.97

97.114

0.388
  recG/mmsA Streptococcus pneumoniae R36A

39.97

97.114

0.388
  recG Bacillus subtilis subsp. subtilis str. 168

39.269

94.805

0.372