Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   Vc3S01_RS12335 Genome accession   NZ_CP020076
Coordinates   2552614..2554872 (-) Length   752 a.a.
NCBI ID   WP_077200955.1    Uniprot ID   -
Organism   Vibrio campbellii strain 20130629003S01     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2547614..2559872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Vc3S01_RS12315 (Vc3S01_2259) kdsB 2548900..2549658 (-) 759 WP_077200953.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  Vc3S01_RS12320 (Vc3S01_2260) - 2549658..2549837 (-) 180 WP_005378451.1 Trm112 family protein -
  Vc3S01_RS12325 (Vc3S01_2261) lpxK 2549818..2550825 (-) 1008 WP_077200954.1 tetraacyldisaccharide 4'-kinase -
  Vc3S01_RS12330 (Vc3S01_2262) msbA 2550831..2552582 (-) 1752 WP_005431688.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  Vc3S01_RS12335 (Vc3S01_2263) comEC 2552614..2554872 (-) 2259 WP_077200955.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  Vc3S01_RS12340 (Vc3S01_2264) - 2554881..2555390 (+) 510 WP_005431694.1 DUF2062 domain-containing protein -
  Vc3S01_RS12345 (Vc3S01_2265) lolE 2555587..2556831 (-) 1245 WP_077200956.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  Vc3S01_RS12350 (Vc3S01_2266) lolD 2556834..2557541 (-) 708 WP_045373222.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  Vc3S01_RS12355 (Vc3S01_2267) lolC 2557534..2558742 (-) 1209 WP_077200957.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  Vc3S01_RS12360 (Vc3S01_2268) - 2559007..2559576 (+) 570 WP_077201286.1 PilZ domain-containing protein -

Sequence

Protein


Download         Length: 752 a.a.        Molecular weight: 84116.35 Da        Isoelectric Point: 9.8179

>NTDB_id=184517 Vc3S01_RS12335 WP_077200955.1 2552614..2554872(-) (comEC) [Vibrio campbellii strain 20130629003S01]
MTLLEKSLTLALFVASVISSAWWPTMPDWRWLLLGIIATGSIIKLRRGLLSIGVIWGFMVVIIHGNVMEHQRQALFRAGV
NITINGKVDSPFTQISHGYEGIAQINQVNSQNLLPFLKPKIRLITAFPLPVNSEFTTQVTIKPILGLKNEAGFDAEKQAI
GKGITARAVTPDDAKWLIRTHSSFRQQIITAVDSHIAELDHFPLISALAFSDRSLLAKQDWQSLRDSGLLHLVSISGLHI
GMAFAFGMSLGFVIRLLFPKFVHLPSAVGLLAALVYAWLADFSLPTTRAFSVCVIYLVLKAALVHWSPWRVLLLAVSIQL
FIEPFASFTMSFWLSYLSVVAVLLAVNVVQQRRGNWQTKLSSLLKIQLVLTLLIVPISGAFFSGTSLVSIAYNLVFIPWF
GFLVVPLMFLALIVTPISFQLAGMLWQLVDWVLLPLTWSLQFAVGSWHFVSLPLTLTILAVAICGLLRRFLNRGSLVTLV
MLVTGVALFYERTTNSWRVDVLDVGHGLAVLIEKHGKVTLYDTGKAWNSGSIAQQVISPILHRRGFGTIDMFIISHADSD
HAGGRHYIEQHFSPAQKFSSQNYANYQSCIAGERWYWQALYFEVLWPPKQVNRAYNPHSCVVRVVDKESGFKLLLTGDIE
AVSEWILMREPNKLESDVMLVPHHGSKSSSNPKFVQTVSPTLAIASLAKSNQWGMPAENVLSAYQAASAHWLDTGNHGQV
SVFIERDNWYFEAKRSETFEPWYRQMLRKGVE

Nucleotide


Download         Length: 2259 bp        

>NTDB_id=184517 Vc3S01_RS12335 WP_077200955.1 2552614..2554872(-) (comEC) [Vibrio campbellii strain 20130629003S01]
ATGACTCTCTTAGAAAAAAGTTTGACCTTGGCGTTATTTGTAGCGAGCGTTATATCGTCTGCGTGGTGGCCGACGATGCC
TGATTGGCGATGGTTGCTGCTGGGAATAATTGCCACTGGCTCGATTATCAAATTACGTCGTGGCTTATTGAGCATAGGCG
TAATTTGGGGCTTTATGGTTGTCATTATCCACGGCAATGTTATGGAGCATCAAAGACAAGCCCTGTTTCGAGCAGGGGTG
AATATTACCATAAATGGCAAAGTTGACAGCCCTTTTACGCAAATAAGTCACGGATATGAAGGAATTGCGCAGATCAATCA
GGTGAATTCTCAAAACCTGTTACCTTTTCTTAAACCGAAAATCCGATTGATAACCGCTTTCCCACTGCCCGTTAACAGTG
AGTTCACTACTCAGGTAACGATCAAACCGATTCTGGGTTTGAAGAATGAGGCGGGGTTTGATGCGGAAAAGCAAGCGATA
GGTAAGGGTATTACCGCTAGAGCTGTCACACCTGATGACGCGAAATGGTTGATTCGTACGCACTCTTCATTTCGACAGCA
AATCATTACGGCCGTTGATAGTCATATTGCTGAGCTTGACCATTTCCCGTTAATCAGTGCATTAGCATTTAGTGACCGCT
CCCTGCTTGCTAAACAGGATTGGCAGTCTCTGCGAGATAGCGGGCTGCTGCATTTGGTCTCGATCTCTGGTTTGCATATT
GGAATGGCGTTTGCGTTTGGCATGAGTTTGGGCTTTGTCATTCGGCTTCTATTCCCCAAGTTTGTTCACCTTCCTTCCGC
TGTCGGTTTATTGGCAGCGCTCGTTTATGCGTGGTTGGCCGATTTTTCCTTACCTACAACCCGTGCTTTTTCGGTTTGTG
TCATTTATCTCGTGCTTAAAGCGGCTTTGGTTCATTGGAGTCCTTGGCGAGTGTTACTACTCGCTGTCTCGATACAGCTT
TTCATCGAGCCTTTTGCTTCATTCACGATGAGCTTCTGGTTGTCTTATCTGTCCGTGGTTGCCGTGCTTTTGGCCGTGAA
TGTGGTTCAACAGCGACGCGGCAATTGGCAAACGAAGCTGAGTTCACTACTAAAAATACAGTTAGTACTTACTTTACTTA
TCGTGCCAATCAGCGGTGCGTTTTTCTCTGGAACAAGTTTGGTGTCCATTGCTTACAACCTAGTTTTCATTCCTTGGTTT
GGTTTTTTGGTCGTCCCTTTGATGTTCCTAGCGCTGATTGTAACCCCAATTTCTTTTCAGTTGGCTGGTATGCTTTGGCA
ACTGGTGGATTGGGTGTTGTTGCCACTGACATGGTCATTACAGTTTGCGGTAGGGAGTTGGCATTTTGTAAGTTTGCCTT
TGACCTTAACGATACTAGCAGTTGCCATCTGTGGATTATTGAGACGTTTTTTGAATCGGGGCTCGCTCGTTACGTTAGTC
ATGCTAGTGACGGGTGTCGCCCTATTTTATGAGCGTACAACAAATTCTTGGCGAGTGGATGTGTTAGATGTAGGGCATGG
CCTTGCGGTATTAATTGAGAAGCATGGAAAGGTGACGCTTTACGACACAGGCAAAGCTTGGAACTCAGGGAGCATCGCTC
AGCAAGTTATCTCTCCTATATTACATCGCAGAGGTTTTGGCACCATTGATATGTTCATTATCAGTCATGCTGATTCGGAT
CATGCAGGAGGTAGGCACTATATAGAGCAGCACTTTTCGCCAGCGCAGAAATTCAGCAGTCAAAACTACGCTAACTACCA
ATCTTGTATTGCGGGTGAACGCTGGTATTGGCAGGCGCTTTATTTTGAAGTCTTATGGCCACCTAAGCAGGTAAACCGTG
CTTATAATCCTCATTCGTGTGTTGTTCGAGTTGTGGATAAGGAATCGGGTTTTAAATTGCTTTTGACTGGCGATATTGAA
GCCGTCAGTGAGTGGATACTTATGCGTGAACCCAACAAGCTAGAGAGTGATGTTATGCTTGTTCCTCATCATGGTAGCAA
GAGCTCTTCGAATCCAAAATTTGTTCAAACTGTCTCTCCAACCTTGGCGATAGCCTCGTTAGCAAAAAGTAATCAATGGG
GCATGCCTGCTGAAAATGTTTTATCGGCTTATCAGGCAGCAAGTGCCCACTGGCTGGATACGGGAAATCATGGGCAGGTA
TCGGTGTTTATTGAGCGAGACAATTGGTACTTTGAAGCTAAACGTAGTGAGACATTTGAGCCTTGGTATAGGCAGATGCT
GCGTAAGGGAGTAGAATAA

Domains

Predicted by InterProScan.

Competence protein (Competence)

(208-466)

Metallo-beta-lactamase superfamily (Lactamase_B)

(504-672)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio campbellii strain DS40M4

97.739

100

0.977
  comEC Vibrio parahaemolyticus RIMD 2210633

66.223

100

0.662
  comEC Vibrio cholerae strain A1552

40.957

100

0.41