Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   BV134_RS05220 Genome accession   NZ_CP020011
Coordinates   1033733..1034398 (-) Length   221 a.a.
NCBI ID   WP_013527272.1    Uniprot ID   A0ABY1VR37
Organism   Haemophilus influenzae strain 67P56H1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1028733..1039398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BV134_RS05190 (BV134_1051) ddc 1029056..1030591 (-) 1536 WP_011272306.1 L-2,4-diaminobutyrate decarboxylase -
  BV134_RS05195 (BV134_1052) vapC 1030611..1031009 (-) 399 WP_005651560.1 type II toxin-antitoxin system tRNA(fMet)-specific endonuclease VapC -
  BV134_RS05200 (BV134_1053) vapB2 1031009..1031242 (-) 234 WP_005648011.1 type II toxin-antitoxin system antitoxin VapB2 -
  BV134_RS05205 (BV134_1054) - 1031389..1032753 (-) 1365 WP_014550999.1 diaminobutyrate--2-oxoglutarate transaminase -
  BV134_RS05210 (BV134_1055) rpmG 1033101..1033271 (-) 171 WP_005613503.1 50S ribosomal protein L33 -
  BV134_RS05215 (BV134_1056) rpmB 1033283..1033519 (-) 237 WP_005542826.1 50S ribosomal protein L28 -
  BV134_RS05220 (BV134_1057) radC 1033733..1034398 (-) 666 WP_013527272.1 RadC family protein Machinery gene
  BV134_RS05225 (BV134_1058) coaBC 1034561..1035763 (+) 1203 WP_050822922.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  BV134_RS05230 (BV134_1059) dut 1035811..1036266 (+) 456 WP_014550997.1 dUTP diphosphatase -
  BV134_RS05235 (BV134_1060) slmA 1036270..1036929 (+) 660 WP_014550996.1 nucleoid occlusion factor SlmA -
  BV134_RS05240 (BV134_1061) - 1036951..1037202 (+) 252 WP_005647999.1 YheU family protein -
  BV134_RS05245 (BV134_1062) crp 1037187..1037861 (+) 675 WP_005647998.1 cAMP-activated global transcriptional regulator CRP Regulator

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24969.23 Da        Isoelectric Point: 6.5991

>NTDB_id=183293 BV134_RS05220 WP_013527272.1 1033733..1034398(-) (radC) [Haemophilus influenzae strain 67P56H1]
MENNDELMPREKLLAFGAKALSDYELLAIFLRTGIKGCPVMSLSKNVLTHFGSLHALLSADKKAFCSVKGLGITQFIQLQ
AITEMTKRYLKQDMLSTPIINDPETVKLFLLTELQHEEREVFMVLFLDNQHRLIKKERLFLGTINVSAVYPREIIKEALY
CNAAALILAHNHPSGITEPSYSDQLITKKIQDAAELMEIRVLDHLIVGKSDCYSFAENCLL

Nucleotide


Download         Length: 666 bp        

>NTDB_id=183293 BV134_RS05220 WP_013527272.1 1033733..1034398(-) (radC) [Haemophilus influenzae strain 67P56H1]
ATGGAAAACAATGATGAATTAATGCCACGAGAAAAATTGCTGGCATTCGGAGCAAAAGCATTAAGTGATTATGAACTACT
TGCGATTTTTTTACGTACTGGTATCAAAGGTTGTCCTGTTATGTCACTTTCTAAAAATGTATTAACGCATTTTGGCTCCT
TGCACGCTTTACTTTCCGCAGATAAAAAAGCTTTCTGTTCTGTAAAAGGCTTAGGTATTACGCAATTTATTCAACTGCAA
GCGATTACGGAAATGACCAAGCGTTATTTAAAGCAAGATATGTTAAGTACGCCGATTATTAATGATCCTGAAACGGTAAA
ACTTTTTTTACTCACTGAATTGCAACACGAGGAAAGAGAAGTATTTATGGTTTTATTTTTAGATAATCAACATCGTTTGA
TTAAAAAAGAGCGGTTATTTTTAGGTACAATTAATGTATCAGCGGTTTATCCGCGAGAAATTATTAAAGAAGCACTCTAT
TGTAATGCGGCAGCTTTAATTTTGGCACATAATCATCCTTCAGGTATAACGGAGCCGAGTTATTCGGATCAGCTTATTAC
TAAAAAAATTCAAGATGCGGCTGAACTAATGGAAATTCGCGTGCTTGATCATTTAATTGTAGGGAAAAGCGATTGTTATT
CTTTCGCGGAGAATTGTTTATTATAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(100-218)

UPF0758 N-terminal (UPF0758_N)

(8-74)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

99.095

100

0.991
  radC Streptococcus pneumoniae TIGR4

37.674

97.285

0.367
  radC Streptococcus pneumoniae R6

37.209

97.285

0.362
  radC Streptococcus pneumoniae D39

37.209

97.285

0.362

Multiple sequence alignment