Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   BV122_RS09400 Genome accession   NZ_CP020009
Coordinates   1880941..1883022 (-) Length   693 a.a.
NCBI ID   WP_014550640.1    Uniprot ID   -
Organism   Haemophilus influenzae strain 5P54H1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1875941..1888022
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BV122_RS09390 (BV122_1928) lldD 1878743..1879888 (-) 1146 WP_042593664.1 FMN-dependent L-lactate dehydrogenase LldD -
  BV122_RS09395 (BV122_1929) murI 1880102..1880911 (-) 810 WP_014550641.1 glutamate racemase -
  BV122_RS09400 (BV122_1930) recG 1880941..1883022 (-) 2082 WP_014550640.1 ATP-dependent DNA helicase RecG Machinery gene
  BV122_RS09405 (BV122_1931) spoT 1883019..1885133 (-) 2115 WP_014550639.1 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase -
  BV122_RS09410 (BV122_1932) rpoZ 1885207..1885473 (-) 267 WP_042593663.1 DNA-directed RNA polymerase subunit omega -
  BV122_RS09415 (BV122_1933) gmk 1885536..1886162 (-) 627 WP_021035427.1 guanylate kinase -

Sequence

Protein


Download         Length: 693 a.a.        Molecular weight: 78012.55 Da        Isoelectric Point: 8.6709

>NTDB_id=183186 BV122_RS09400 WP_014550640.1 1880941..1883022(-) (recG) [Haemophilus influenzae strain 5P54H1]
MSLELLDAVPLTSLSGVGAAISNKLAKIGIHNLQDLLFHLPIRYEDRTRITPIANLRPEQYFTIEGIVQTCEVAFGRRPI
LSVSLSDGTSKIMLRFFNFNVGMRNSFQVGVRVKAFGEVKRGRHMPEIHHPEYQIVRDNAPIVLEETLTPIYSTTEGLKQ
NSLRKLTDQALALLDKVQIAEILPNEFNPHQYSLKEALGLLHRPPPDISLEMLEQGKHPAQQRLIFEELLAHNLAMQKVR
LGTQQFSALPLHYQTDLKQRFLATLPFQPTNAQKRVVSDIEQDLIKDYPMMRLVQGDVGSGKTLVAALAALTAIDNGKQV
ALMAPTEILAEQHANNFRRWFEPFGIEVGWLAGKVKGKSRQAELEKIKTGAVQMVVGTHALFQEEVEFSDLALVIIDEQH
RFGVHQRLMLRKKGEKAGFYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVVVSEERRTEIVMRVKNACV
NEKRQAYWVCTLIDESEVLEAQAAEAIWEDLTKALPMLNIGLVHGRMKPQEKQDVMMRFKNAELDLLVATTVIEVGVDVP
NASLMIIENAERLGLSQLHQLRGRVGRGSTASFCVLMYKPPLGKVSQKRLQVLRDSQDGFVISEKDLEIRGPGEVLGTKQ
TGIAELRVANLMRDRKMIPTVQHYAKSLIQKYPDVAESLIRRWLNNKEIYSNA

Nucleotide


Download         Length: 2082 bp        

>NTDB_id=183186 BV122_RS09400 WP_014550640.1 1880941..1883022(-) (recG) [Haemophilus influenzae strain 5P54H1]
ATGAGCCTTGAACTTCTCGATGCCGTGCCTTTGACCAGCCTTTCTGGTGTGGGGGCTGCCATTTCTAATAAACTGGCTAA
AATCGGCATTCATAACCTGCAGGATTTACTCTTTCATTTACCTATTCGCTATGAAGATCGTACGCGAATTACGCCAATCG
CTAATCTTCGCCCTGAACAATATTTTACTATAGAGGGAATTGTACAAACCTGTGAAGTCGCTTTTGGCCGCCGCCCGATT
TTATCGGTAAGTTTGTCAGACGGCACATCGAAAATTATGTTACGTTTTTTCAATTTTAATGTGGGAATGCGTAATAGTTT
TCAAGTTGGCGTGCGAGTAAAGGCCTTTGGAGAGGTAAAACGTGGGCGTCACATGCCAGAAATTCATCATCCAGAATATC
AAATTGTGCGAGATAATGCGCCCATAGTATTGGAAGAAACCCTAACGCCGATTTATTCCACAACGGAAGGGCTAAAACAA
AATTCATTACGAAAATTAACGGATCAGGCTTTGGCATTACTCGACAAAGTTCAGATTGCAGAAATTTTGCCTAATGAATT
TAATCCACATCAATATAGCTTAAAAGAGGCATTGGGATTATTGCATCGTCCGCCGCCAGATATTTCATTAGAAATGTTAG
AGCAAGGTAAGCATCCTGCACAACAACGATTAATTTTTGAAGAGCTTCTAGCACATAATTTAGCTATGCAAAAAGTGCGG
TTAGGAACGCAACAATTTTCTGCCTTACCGCTACATTATCAAACAGATTTAAAACAGCGATTTTTAGCCACCTTGCCATT
TCAACCCACTAATGCGCAAAAGCGAGTAGTGTCCGATATTGAACAAGATCTTATCAAAGATTATCCGATGATGCGCTTAG
TGCAAGGGGATGTGGGCTCGGGAAAAACATTGGTTGCCGCATTGGCTGCTTTAACTGCAATTGATAACGGCAAACAAGTC
GCCTTAATGGCGCCAACAGAAATTCTTGCAGAACAGCATGCGAATAATTTTAGACGGTGGTTTGAGCCTTTCGGTATTGA
AGTTGGCTGGTTGGCAGGTAAAGTAAAAGGAAAATCAAGACAAGCAGAGCTTGAAAAAATCAAAACTGGTGCGGTGCAAA
TGGTGGTGGGGACGCATGCTTTATTCCAAGAAGAAGTCGAGTTTTCCGACTTAGCATTAGTGATTATTGATGAACAACAT
CGTTTTGGGGTGCATCAACGATTAATGTTGCGTAAAAAAGGCGAAAAAGCAGGATTTTATCCCCATCAGTTAATTATGAC
GGCAACACCGATTCCAAGAACGTTGGCAATGACCGTCTATGCAGATTTGGATACATCAATTATTGATGAATTGCCTCCAG
GCCGTACGCCGATAACAACCGTAGTGGTTTCTGAAGAACGTCGCACTGAAATTGTGATGCGTGTAAAAAACGCTTGTGTT
AATGAAAAACGTCAAGCCTATTGGGTGTGTACGTTAATTGATGAATCAGAGGTGTTAGAAGCTCAAGCAGCTGAAGCGAT
TTGGGAAGATTTAACGAAAGCGTTACCGATGTTAAATATTGGTTTAGTGCACGGGCGCATGAAACCCCAAGAAAAACAAG
ATGTCATGATGCGTTTTAAAAATGCAGAATTGGATTTATTGGTGGCGACGACAGTTATCGAAGTGGGGGTTGATGTTCCG
AATGCAAGTTTGATGATTATCGAAAATGCAGAACGTTTAGGTTTATCGCAGCTTCATCAGTTACGAGGGCGCGTTGGTCG
AGGCAGCACGGCTTCTTTTTGTGTACTAATGTATAAACCTCCGCTCGGCAAAGTTTCGCAAAAACGTTTGCAAGTGCTAC
GAGATAGCCAAGATGGGTTTGTTATTTCGGAAAAAGATTTAGAAATTCGTGGGCCAGGTGAAGTACTTGGAACGAAACAA
ACGGGAATTGCTGAATTGCGAGTAGCAAATTTAATGCGAGATAGAAAAATGATACCAACGGTGCAACATTATGCGAAATC
ACTTATCCAAAAATACCCTGATGTGGCAGAAAGCCTAATCCGTCGCTGGCTCAATAATAAAGAAATCTACTCGAACGCTT
AA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(273-405)

Helicase conserved C-terminal domain (Helicase_C)

(480-588)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(617-677)

RecG wedge domain (RecG_wedge)

(15-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

49.333

97.403

0.481
  recG Bacillus subtilis subsp. subtilis str. 168

39.104

96.681

0.378
  recG/mmsA Streptococcus pneumoniae R6

39.269

94.805

0.372
  recG/mmsA Streptococcus pneumoniae R36A

39.269

94.805

0.372