Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   BV083_RS05435 Genome accession   NZ_CP020006
Coordinates   1083572..1084237 (-) Length   221 a.a.
NCBI ID   WP_105210541.1    Uniprot ID   -
Organism   Haemophilus influenzae strain 48P106H1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1078572..1089237
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BV083_RS05405 (BV083_1101) ddc 1078896..1080431 (-) 1536 WP_005686206.1 L-2,4-diaminobutyrate decarboxylase -
  BV083_RS05410 (BV083_1102) vapC 1080451..1080849 (-) 399 WP_005651560.1 type II toxin-antitoxin system tRNA(fMet)-specific endonuclease VapC -
  BV083_RS05415 (BV083_1103) vapB2 1080849..1081082 (-) 234 WP_005686209.1 type II toxin-antitoxin system antitoxin VapB2 -
  BV083_RS05420 (BV083_1104) - 1081229..1082593 (-) 1365 WP_005686211.1 diaminobutyrate--2-oxoglutarate transaminase -
  BV083_RS05425 (BV083_1105) rpmG 1082940..1083110 (-) 171 WP_005613503.1 50S ribosomal protein L33 -
  BV083_RS05430 (BV083_1106) rpmB 1083122..1083358 (-) 237 WP_005542826.1 50S ribosomal protein L28 -
  BV083_RS05435 (BV083_1107) radC 1083572..1084237 (-) 666 WP_105210541.1 RadC family protein Machinery gene
  BV083_RS05440 (BV083_1108) coaBC 1084401..1085603 (+) 1203 WP_005686217.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  BV083_RS05445 (BV083_1109) dut 1085651..1086106 (+) 456 WP_005631431.1 dUTP diphosphatase -
  BV083_RS05450 (BV083_1110) slmA 1086110..1086766 (+) 657 WP_005648000.1 nucleoid occlusion factor SlmA -
  BV083_RS05455 (BV083_1111) - 1086788..1087039 (+) 252 WP_005647999.1 YheU family protein -
  BV083_RS05460 (BV083_1112) crp 1087024..1087698 (+) 675 WP_005647998.1 cAMP-activated global transcriptional regulator CRP Regulator

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24967.29 Da        Isoelectric Point: 6.4852

>NTDB_id=182977 BV083_RS05435 WP_105210541.1 1083572..1084237(-) (radC) [Haemophilus influenzae strain 48P106H1]
MENNDELMPREKLLAFGAKALSDYELLAIFLRTGIKGCPVMSLSKNVLTHFGSLHALLSADKKAFCSVKGLGITQFIQLQ
AITEMTKRYLKQDMLSTPIINDPETVKLFLLTELQCEEREVFMVLFLDNQHRLIKKERLFLGTINVSAVYPREIIKEALY
CNAAALILAHNHPSGITEPSYSDQLITKKIQDAAELMEIRMLDHLIVGKSDCYSFAENCLL

Nucleotide


Download         Length: 666 bp        

>NTDB_id=182977 BV083_RS05435 WP_105210541.1 1083572..1084237(-) (radC) [Haemophilus influenzae strain 48P106H1]
ATGGAAAACAATGATGAATTAATGCCACGGGAAAAATTGCTGGCATTCGGAGCAAAAGCATTAAGTGATTATGAACTACT
TGCGATTTTTTTACGTACTGGTATCAAAGGTTGTCCTGTTATGTCACTTTCTAAAAATGTATTAACGCATTTTGGCTCCT
TGCACGCTTTACTTTCCGCAGATAAAAAAGCTTTCTGTTCTGTAAAAGGCTTAGGTATTACGCAATTTATTCAACTGCAA
GCGATTACGGAAATGACCAAGCGTTATTTAAAGCAAGATATGTTAAGTACGCCGATTATTAATGATCCTGAAACGGTAAA
ACTTTTTTTACTCACTGAATTGCAATGCGAGGAAAGAGAAGTATTTATGGTTTTATTTTTAGATAATCAACATCGTTTGA
TTAAAAAAGAGCGGTTATTTTTAGGTACAATTAATGTATCAGCGGTTTATCCGCGAGAAATTATTAAAGAAGCACTCTAT
TGTAATGCGGCAGCTTTAATTTTGGCACATAATCATCCTTCAGGTATAACGGAGCCGAGTTATTCGGATCAGCTTATTAC
TAAAAAAATTCAAGATGCGGCTGAACTAATGGAAATTCGCATGCTTGATCATTTAATTGTAGGGAAAAGCGATTGTTATT
CTTTCGCGGAGAATTGTTTATTATAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(100-218)

UPF0758 N-terminal (UPF0758_N)

(8-74)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

98.19

100

0.982
  radC Streptococcus pneumoniae TIGR4

37.674

97.285

0.367
  radC Streptococcus pneumoniae R6

37.209

97.285

0.362
  radC Streptococcus pneumoniae D39

37.209

97.285

0.362