Detailed information
Bioinformatically predicted
Overview
| Name | comGG | Type | Machinery gene |
| Locus tag | LL158_RS10550 | Genome accession | NZ_CP015894 |
| Coordinates | 2073722..2074021 (-) | Length | 99 a.a. |
| NCBI ID | WP_011677181.1 | Uniprot ID | A0AA47KWG7 |
| Organism | Lactococcus cremoris strain 158 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 2069135..2073589 | 2073722..2074021 | flank | 133 |
Gene organization within MGE regions
Location: 2069135..2074021
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LL158_RS10530 (LL158_03375) | - | 2070648..2071457 (-) | 810 | WP_011677177.1 | metal ABC transporter permease | - |
| LL158_RS10535 (LL158_03380) | - | 2071450..2072187 (-) | 738 | WP_015082929.1 | metal ABC transporter ATP-binding protein | - |
| LL158_RS10540 (LL158_03385) | - | 2072366..2073208 (-) | 843 | WP_011677179.1 | metal ABC transporter solute-binding protein, Zn/Mn family | - |
| LL158_RS10545 (LL158_03390) | - | 2073205..2073642 (-) | 438 | WP_011677180.1 | zinc-dependent MarR family transcriptional regulator | - |
| LL158_RS10550 (LL158_03395) | comGG | 2073722..2074021 (-) | 300 | WP_011677181.1 | competence type IV pilus minor pilin ComGG | Machinery gene |
Sequence
Protein
Download Length: 99 a.a. Molecular weight: 11240.23 Da Isoelectric Point: 9.5415
>NTDB_id=182848 LL158_RS10550 WP_011677181.1 2073722..2074021(-) (comGG) [Lactococcus cremoris strain 158]
MVLLLIFSLFLQFYLQKQVLTAQQLKIEKERLTAELMVSLALKKDLKTSGQLNFDCGNLTYKLLTDLSADSTSGGQTVSN
KTYCFDVRLKDGRIFQIVK
MVLLLIFSLFLQFYLQKQVLTAQQLKIEKERLTAELMVSLALKKDLKTSGQLNFDCGNLTYKLLTDLSADSTSGGQTVSN
KTYCFDVRLKDGRIFQIVK
Nucleotide
Download Length: 300 bp
>NTDB_id=182848 LL158_RS10550 WP_011677181.1 2073722..2074021(-) (comGG) [Lactococcus cremoris strain 158]
TTGGTTTTACTGCTAATTTTTTCTTTATTTCTACAGTTTTATTTGCAAAAACAGGTGCTTACAGCTCAGCAATTGAAAAT
AGAAAAGGAGCGACTGACAGCCGAATTAATGGTTTCATTGGCTCTTAAAAAGGATTTGAAAACGAGTGGTCAACTTAATT
TTGATTGTGGAAATTTAACTTACAAATTACTGACAGATCTGTCAGCTGATTCAACTAGCGGTGGTCAAACTGTTAGTAAT
AAAACTTATTGTTTTGATGTTCGGCTTAAGGATGGAAGAATTTTTCAAATAGTAAAGTAA
TTGGTTTTACTGCTAATTTTTTCTTTATTTCTACAGTTTTATTTGCAAAAACAGGTGCTTACAGCTCAGCAATTGAAAAT
AGAAAAGGAGCGACTGACAGCCGAATTAATGGTTTCATTGGCTCTTAAAAAGGATTTGAAAACGAGTGGTCAACTTAATT
TTGATTGTGGAAATTTAACTTACAAATTACTGACAGATCTGTCAGCTGATTCAACTAGCGGTGGTCAAACTGTTAGTAAT
AAAACTTATTGTTTTGATGTTCGGCTTAAGGATGGAAGAATTTTTCAAATAGTAAAGTAA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGG | Lactococcus lactis subsp. cremoris KW2 |
98.99 |
100 |
0.99 |