Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   A9C11_RS04970 Genome accession   NZ_CP015878
Coordinates   1119861..1121198 (-) Length   445 a.a.
NCBI ID   WP_009617580.1    Uniprot ID   A0A1A5D7F7
Organism   Pseudomonas citronellolis strain SJTE-3     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1114861..1126198
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A9C11_RS04945 (A9C11_04940) - 1115548..1116018 (-) 471 WP_064581946.1 pilus assembly PilX family protein -
  A9C11_RS33905 - 1116015..1116926 (-) 912 WP_082936676.1 PilW family protein -
  A9C11_RS04950 (A9C11_04945) pilV 1116923..1117381 (-) 459 WP_082936677.1 type IV pilus modification protein PilV -
  A9C11_RS04955 (A9C11_04950) - 1117381..1117866 (-) 486 WP_237142621.1 GspH/FimT family pseudopilin -
  A9C11_RS04960 (A9C11_04955) - 1118016..1118528 (-) 513 WP_064581949.1 GspH/FimT family protein -
  A9C11_RS04965 (A9C11_04960) thiO 1118707..1119816 (+) 1110 WP_064581952.1 glycine oxidase ThiO -
  A9C11_RS04970 (A9C11_04965) pilR 1119861..1121198 (-) 1338 WP_009617580.1 sigma-54-dependent transcriptional regulator Regulator
  A9C11_RS04975 (A9C11_04970) pilS 1121210..1122799 (-) 1590 WP_043273654.1 sensor histidine kinase Regulator
  A9C11_RS04980 (A9C11_04975) - 1122792..1123022 (-) 231 WP_043318040.1 PP0621 family protein -
  A9C11_RS04985 (A9C11_04980) - 1123161..1124174 (-) 1014 WP_009617585.1 outer membrane protein assembly factor BamD -
  A9C11_RS04990 (A9C11_04985) rluD 1124321..1125280 (+) 960 WP_043318043.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  A9C11_RS04995 (A9C11_04990) pgeF 1125277..1126005 (+) 729 WP_064581955.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49524.78 Da        Isoelectric Point: 5.6352

>NTDB_id=182693 A9C11_RS04970 WP_009617580.1 1119861..1121198(-) (pilR) [Pseudomonas citronellolis strain SJTE-3]
MSRQKALIVDDEPDIRELLEITLGRMKLDTRSARNVKEAKEYLAREPFDLCLTDMRLPDGTGMDLVQHIQQRHPQVPVAM
ITAFGSLDTAVNALKAGAFDFLTKPVDLGRLRELVATALRLRSPGAEDAPVDNRLLGDSPPMRQMRNQIAKLARSQAPVY
ISGESGSGKELVARLIHEQGPRSEVAFVPVNCGAIPSELMESEFFGHKKGSFTGAVEDKQGLFQAANGGTLFLDEVADLP
LPMQVKLLRAIQEKAVRAVGGQQEVAVDVRVLCATHKDLAAEVAAGRFRQDLYYRLNVIELRVPPLRERREDIPLLTERV
LKRLASDSGLAAAQVSPEALEKLKSYRFPGNVRELENMLERAYTLCEDDVIQPNDLRFAEATGGGESGEASLAQIDNLED
YLEEIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=182693 A9C11_RS04970 WP_009617580.1 1119861..1121198(-) (pilR) [Pseudomonas citronellolis strain SJTE-3]
ATGAGCCGGCAAAAAGCCCTGATCGTCGACGACGAACCGGATATCCGCGAGCTGCTGGAGATCACCCTCGGCCGCATGAA
GCTGGACACCCGCAGCGCCCGCAACGTCAAGGAGGCCAAGGAATACCTGGCCCGCGAGCCCTTCGACCTGTGCCTGACCG
ACATGCGCCTGCCCGACGGCACCGGCATGGACCTGGTGCAGCACATCCAGCAGCGCCACCCGCAGGTGCCGGTGGCCATG
ATCACCGCCTTCGGCAGCCTGGACACCGCGGTCAACGCGCTCAAGGCCGGCGCCTTCGACTTCCTCACCAAGCCGGTGGA
CCTCGGCCGACTGCGCGAACTGGTGGCCACGGCCCTGCGCCTGCGCTCGCCGGGCGCGGAAGACGCGCCGGTGGACAACC
GCCTGCTGGGCGATTCGCCGCCCATGCGGCAGATGCGCAACCAGATCGCCAAGCTGGCGCGCAGCCAGGCGCCGGTCTAC
ATCAGCGGCGAATCCGGCAGCGGCAAGGAGCTGGTGGCCCGGCTGATCCACGAACAGGGCCCGCGCAGCGAAGTGGCCTT
CGTCCCGGTGAACTGCGGCGCCATCCCGTCCGAGCTGATGGAAAGCGAATTCTTCGGGCACAAGAAAGGCAGCTTCACCG
GCGCCGTGGAAGACAAGCAGGGCCTGTTCCAGGCCGCCAACGGCGGCACCCTGTTCCTCGACGAGGTGGCCGACCTGCCC
TTGCCGATGCAGGTGAAACTGCTGCGCGCCATCCAGGAAAAGGCCGTGCGCGCAGTGGGCGGCCAGCAGGAAGTGGCGGT
GGACGTGCGCGTGCTCTGTGCCACCCACAAGGACCTGGCCGCGGAAGTCGCCGCCGGCCGCTTCCGCCAGGACCTCTACT
ACCGCCTGAACGTCATCGAACTGCGCGTGCCGCCGCTGCGCGAGCGCCGCGAGGACATCCCGCTGCTCACCGAGCGCGTG
CTCAAGCGCCTGGCCAGCGACAGCGGCCTGGCCGCGGCGCAGGTCAGCCCCGAAGCCCTGGAAAAGCTCAAGAGCTACCG
TTTCCCGGGCAACGTGCGCGAGCTGGAGAACATGCTCGAGCGCGCCTACACCCTGTGCGAGGACGATGTCATCCAGCCCA
ACGACCTGCGCTTCGCCGAGGCCACCGGCGGCGGCGAAAGCGGCGAGGCCAGCCTGGCGCAGATCGACAACCTTGAGGAC
TACCTCGAAGAGATCGAACGCAAGCTGATCATGCAGGCGCTGGAAGAAACCCGCTGGAACCGCACCGCCGCTGCCCAGCG
GCTGGGGCTGACGTTCCGCTCGATGCGCTATCGCTTGAAGAAGCTGGGGATCGATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-115)

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)

Sigma-54 interaction domain (Sigma54_activat)

(136-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1A5D7F7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

88.764

100

0.888
  pilR Acinetobacter baumannii strain A118

49.891

100

0.515

Multiple sequence alignment