Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   A9C11_RS04975 Genome accession   NZ_CP015878
Coordinates   1121210..1122799 (-) Length   529 a.a.
NCBI ID   WP_043273654.1    Uniprot ID   A0A1A5D6Q3
Organism   Pseudomonas citronellolis strain SJTE-3     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1116210..1127799
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A9C11_RS04950 (A9C11_04945) pilV 1116923..1117381 (-) 459 WP_082936677.1 type IV pilus modification protein PilV -
  A9C11_RS04955 (A9C11_04950) - 1117381..1117866 (-) 486 WP_237142621.1 GspH/FimT family pseudopilin -
  A9C11_RS04960 (A9C11_04955) - 1118016..1118528 (-) 513 WP_064581949.1 GspH/FimT family protein -
  A9C11_RS04965 (A9C11_04960) thiO 1118707..1119816 (+) 1110 WP_064581952.1 glycine oxidase ThiO -
  A9C11_RS04970 (A9C11_04965) pilR 1119861..1121198 (-) 1338 WP_009617580.1 sigma-54-dependent transcriptional regulator Regulator
  A9C11_RS04975 (A9C11_04970) pilS 1121210..1122799 (-) 1590 WP_043273654.1 sensor histidine kinase Regulator
  A9C11_RS04980 (A9C11_04975) - 1122792..1123022 (-) 231 WP_043318040.1 PP0621 family protein -
  A9C11_RS04985 (A9C11_04980) - 1123161..1124174 (-) 1014 WP_009617585.1 outer membrane protein assembly factor BamD -
  A9C11_RS04990 (A9C11_04985) rluD 1124321..1125280 (+) 960 WP_043318043.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  A9C11_RS04995 (A9C11_04990) pgeF 1125277..1126005 (+) 729 WP_064581955.1 peptidoglycan editing factor PgeF -
  A9C11_RS35200 - 1126106..1126270 (+) 165 WP_157763221.1 hypothetical protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58463.49 Da        Isoelectric Point: 7.2738

>NTDB_id=182694 A9C11_RS04975 WP_043273654.1 1121210..1122799(-) (pilS) [Pseudomonas citronellolis strain SJTE-3]
MAKAIPISGQQGQRILRLYHLYRLSIGLLLVLLISSDLDDRVLNVGQSALFHASCWSYLIVNILIAVLMPTPRQLLPIFL
LALFDILALCGLFYAAGGVPSGIGNLLVVAVGIANILLRGRIGLLIAAVAAIGMIYLTFYLSLSQPTAINHYVQAGSLGA
LSFAAALLLQGLARRQQLTEHLAEERATTVANLEELNALILQRMRTGILVLDSRHRVLLANQSALGLLAQPELAGKLATE
HCPELLDSLQQWERNPSLRPPSLQAPEGGPMLQPSFIPLRRGEEQHTLVFLEDISQIAQQAQQLKLAALGRLTAGIAHEI
RNPLGAISHAAQLLQESETLDAPDRRLTQIIQDQSRRMNLVIENVLQLSRRRQAEPQQLDLRQWLQRFTDEQREGLRGDQ
QIHLQMGGGEIQTRMDPSQLTQVLGNLVQNGLRYSARQNGSGQVWLNLFRDRDSDLPVLEVLDDGPGIAPEQLGKLFEPF
FTTESKGTGLGLYISRELCESNQARIDFKNRDEGGGSFRITFAHPRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=182694 A9C11_RS04975 WP_043273654.1 1121210..1122799(-) (pilS) [Pseudomonas citronellolis strain SJTE-3]
ATGGCTAAGGCCATCCCCATCAGCGGCCAGCAGGGGCAGCGCATCCTCCGCCTGTACCACCTGTACCGCCTGAGCATCGG
CCTGCTGCTGGTGCTGCTGATTTCCAGCGACCTCGACGACCGCGTGCTCAACGTCGGCCAGTCGGCGCTGTTCCATGCCA
GTTGCTGGAGCTACCTGATCGTCAACATCCTGATCGCCGTGCTGATGCCGACGCCGCGCCAGTTGCTGCCGATCTTCCTG
CTGGCGCTGTTCGACATCCTCGCGCTATGCGGCCTGTTCTACGCCGCCGGCGGCGTGCCCAGCGGCATCGGCAACCTGCT
GGTGGTGGCGGTGGGCATCGCCAACATCCTGCTGCGCGGGCGCATCGGCCTGCTGATCGCCGCCGTCGCCGCGATCGGCA
TGATCTACCTGACCTTCTACCTCAGCCTCAGCCAGCCCACGGCGATCAACCACTACGTCCAGGCCGGCAGCCTCGGCGCC
CTGAGCTTCGCCGCCGCGCTGCTGCTGCAGGGCCTGGCGCGGCGCCAGCAACTCACCGAGCACCTGGCCGAGGAACGCGC
CACCACCGTGGCAAACCTCGAAGAGCTCAACGCCCTCATCCTGCAGCGCATGCGCACCGGCATCCTGGTGCTGGACAGCC
GGCACCGCGTGCTGCTGGCCAACCAGAGCGCCCTGGGCCTGCTGGCCCAGCCGGAACTGGCGGGCAAGCTCGCCACCGAG
CATTGCCCGGAGCTGCTCGACAGCCTGCAGCAGTGGGAACGCAACCCCTCGCTGCGCCCGCCCAGCCTGCAGGCGCCCGA
AGGCGGCCCCATGCTGCAGCCGAGCTTCATCCCGCTGCGCCGCGGCGAGGAACAGCACACCCTGGTCTTCCTCGAGGACA
TCTCGCAGATCGCCCAGCAGGCCCAGCAGCTCAAGCTGGCGGCCCTGGGCCGGCTGACCGCCGGCATCGCCCACGAGATC
CGCAACCCCCTGGGCGCCATCAGCCACGCCGCGCAGTTGCTGCAGGAATCCGAAACGCTCGACGCCCCCGACCGGCGCCT
GACGCAGATCATCCAGGACCAGTCGCGGCGCATGAACCTGGTGATCGAGAACGTCCTGCAACTGTCGCGGCGGCGCCAGG
CCGAGCCGCAACAGCTGGACCTCAGGCAGTGGCTGCAGCGCTTCACCGACGAGCAGCGCGAAGGCCTGCGCGGCGACCAG
CAGATCCACCTGCAAATGGGCGGCGGCGAGATCCAGACGCGCATGGACCCCAGCCAACTCACCCAGGTGCTGGGTAACCT
GGTGCAGAATGGGTTACGGTACAGTGCCCGGCAGAACGGCAGCGGCCAGGTGTGGTTGAACCTGTTCCGCGACCGGGACA
GCGACCTGCCGGTGCTGGAGGTGCTCGACGACGGCCCCGGCATCGCCCCGGAGCAGCTGGGCAAGCTGTTCGAACCCTTC
TTCACCACCGAGAGCAAGGGCACCGGGCTGGGCCTGTACATTTCCCGCGAGCTGTGCGAAAGCAACCAGGCCCGCATCGA
CTTCAAGAACCGCGACGAAGGCGGTGGCAGCTTCCGCATCACCTTCGCCCACCCGCGCAAGCAGAGCTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(308-372)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(416-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1A5D6Q3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

73.295

99.811

0.732

Multiple sequence alignment