Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   B2J87_RS15030 Genome accession   NZ_CP019961
Coordinates   2928551..2929288 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain HKUOPY1     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2923551..2934288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B2J87_RS14995 (B2J87_15145) yfiL 2923709..2924074 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  B2J87_RS15000 (B2J87_15150) aroF 2924284..2925354 (+) 1071 WP_001168037.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  B2J87_RS15005 (B2J87_15155) tyrA 2925365..2926486 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  B2J87_RS15010 (B2J87_15160) pheA 2926529..2927689 (-) 1161 WP_089624096.1 bifunctional chorismate mutase/prephenate dehydratase -
  B2J87_RS15015 pheL 2927788..2927835 (-) 48 WP_010723158.1 phe operon leader peptide -
  B2J87_RS15020 (B2J87_15165) raiA 2927939..2928280 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  B2J87_RS15030 (B2J87_15175) comL 2928551..2929288 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  B2J87_RS15035 (B2J87_15180) rluD 2929423..2930403 (+) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  B2J87_RS15040 (B2J87_15185) yfiH 2930400..2931131 (+) 732 WP_000040169.1 purine nucleoside phosphorylase YfiH -
  B2J87_RS15045 (B2J87_15190) clpC 2931261..2933834 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=182607 B2J87_RS15030 WP_000197686.1 2928551..2929288(-) (comL) [Escherichia coli strain HKUOPY1]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=182607 B2J87_RS15030 WP_000197686.1 2928551..2929288(-) (comL) [Escherichia coli strain HKUOPY1]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment