Detailed information NTG0182584

Bioinformatically predicted

Overview

• Name: comEC
• Type: Machinery gene
• Locus tag: A8140_RS05350
• Genome accession: NZ_CP015863
• Coordinates: 1111090..1113348 (+)
• Length: 752 a.a.
• NCBI ID: WP_005531988.1
• Uniprot ID: -
• Organism: Vibrio campbellii CAIM 519 = NBRC 15631 = ATCC 25920 strain ATCC 25920 CAIM 519T
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1106090..1118348

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A8140_RS05325 (A8140_05125)	-	1106381..1106950 (-)	570	WP_038863259.1	hypothetical protein	-
A8140_RS05330 (A8140_05130)	lolC	1107215..1108423 (+)	1209	WP_005531996.1	lipoprotein-releasing ABC transporter permease subunit LolC	-
A8140_RS05335 (A8140_05135)	lolD	1108416..1109123 (+)	708	WP_005531994.1	lipoprotein-releasing ABC transporter ATP-binding protein LolD	-
A8140_RS05340 (A8140_05140)	lolE	1109126..1110370 (+)	1245	WP_005531990.1	lipoprotein-releasing ABC transporter permease subunit LolE	-
A8140_RS05345 (A8140_05145)	-	1110572..1111081 (-)	510	WP_005531989.1	DUF2062 domain-containing protein	-
A8140_RS05350 (A8140_05150)	comEC	1111090..1113348 (+)	2259	WP_005531988.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
A8140_RS05355 (A8140_05155)	msbA	1113380..1115131 (+)	1752	WP_005531986.1	lipid A ABC transporter ATP-binding protein/permease MsbA	-
A8140_RS05360 (A8140_05160)	lpxK	1115137..1116144 (+)	1008	WP_005531984.1	tetraacyldisaccharide 4'-kinase	-
A8140_RS05365 (A8140_05165)	-	1116125..1116304 (+)	180	WP_005378451.1	Trm112 family protein	-
A8140_RS05370 (A8140_05170)	kdsB	1116304..1117062 (+)	759	WP_005531982.1	3-deoxy-manno-octulosonate cytidylyltransferase	-

Sequence

Protein

• Length: 752 a.a.
• Molecular weight: 84147.52 Da
• Isoelectric Point: 10.0992

>NTDB_id=182584 A8140_RS05350 WP_005531988.1 1111090..1113348(+) (comEC) [Vibrio campbellii CAIM 519 = NBRC 15631 = ATCC 25920 strain ATCC 25920 CAIM 519T]
MTLLEKSLTLALFVASVISSAWWPAMPDWRWLLLGIIATGSIIKLRRGLLSIGVIWGFMVVIIHGNVMEHQRQALFRAGV
NITINGKVDSPFTQISHGYEGIAQINQVNSQNLLPFLKPKIRLITAFPLPVNTEFTTQVTIKPILGLKNEAGFDAEKQAI
GKGIVARAVTPDDAKWLIRTHSSFRQQIITAVDTHIAELNHFPLISALAFSDRSLLAKQDWQSLRDSGLLHLVSISGLHI
GMAFAFGMSLGFVIRLIIPKFVHFPSVVGLLAALVYAWLADFSLPTTRAFSVCVIYLVLKAALVHWSPWRVLLLAVSIQL
FIEPFASFTMSFWLSYLSVVAVLLAVNVVQRRRGNWQTKLSSLLKIQLVLTLLIVPISGAFFSGTSLVSIAYNLVFIPWF
GFLVVPLMFLALIVTPISFQLAGMLWQLVDWVLLPLTWSLQFAVGSWHFVSLPLTLTILAVATCGLLRRFLNRGSFVTLV
ILVKGVALFYERTTSSWRVDVLDVGHGLAVLIEKHGKVTLYDTGKAWNSGSIAQQVLSPVLHRRGFGTIDMFIISHADSD
HAGGRQYIEQHFSPAQKFSSQNYANYQSCIAGERWYWQALYFEVLWPPKQVNRAYNPHSCVVRVVDKESGFKLLLTGDIE
AVSEWILMREPNKLESDVMLVPHHGSKSSSNPKFVQTVSPTLAIASLAKSNQWGMPAENVLSAYQAASAHWLDTGNHGQV
SVFIKRDNWYFEAKRSETFEPWYRQMLRKGVE

Nucleotide

• Length: 2259 bp

>NTDB_id=182584 A8140_RS05350 WP_005531988.1 1111090..1113348(+) (comEC) [Vibrio campbellii CAIM 519 = NBRC 15631 = ATCC 25920 strain ATCC 25920 CAIM 519T]
ATGACTCTCTTAGAAAAAAGTTTGACCTTGGCGTTATTTGTAGCGAGCGTTATATCGTCTGCGTGGTGGCCGGCGATGCC
TGATTGGCGATGGTTGCTGCTGGGAATAATTGCCACTGGCTCGATTATCAAATTACGTCGTGGCTTATTGAGCATAGGCG
TAATTTGGGGCTTTATGGTTGTCATTATCCACGGCAATGTTATGGAGCATCAAAGACAAGCCCTGTTTCGAGCAGGGGTG
AATATTACCATAAATGGCAAAGTTGACAGCCCTTTTACGCAAATAAGTCACGGATATGAAGGAATTGCGCAGATCAATCA
GGTGAATTCTCAAAACCTGTTACCTTTTCTTAAACCGAAAATCCGATTGATAACCGCTTTCCCACTGCCCGTTAACACTG
AGTTCACTACTCAGGTGACGATCAAACCGATTCTGGGTTTGAAGAATGAGGCGGGGTTTGATGCGGAAAAGCAAGCGATA
GGTAAGGGTATTGTCGCTAGAGCTGTCACACCTGATGACGCGAAATGGTTGATTCGTACACACTCTTCATTTCGACAGCA
AATCATTACGGCCGTTGATACTCATATTGCTGAACTTAACCATTTCCCTTTAATCAGTGCATTAGCGTTTAGCGACCGCT
CCCTGCTTGCTAAACAGGATTGGCAGTCTCTGCGAGATAGCGGGCTGCTGCATTTGGTCTCGATCTCTGGTTTGCATATT
GGAATGGCGTTTGCTTTTGGCATGAGTTTGGGATTTGTCATACGGCTTATAATCCCAAAATTCGTTCACTTTCCTTCCGT
TGTCGGTTTATTGGCAGCGCTCGTTTATGCGTGGTTGGCCGATTTTTCTTTACCTACAACCCGTGCTTTTTCGGTTTGTG
TCATTTATCTCGTACTTAAAGCGGCTTTGGTTCATTGGAGCCCTTGGCGAGTGTTACTGCTCGCTGTCTCGATACAGCTT
TTCATCGAGCCTTTTGCTTCATTCACGATGAGTTTCTGGTTGTCTTATCTGTCCGTGGTTGCCGTGCTTTTAGCCGTGAA
TGTGGTTCAACGGCGACGCGGCAATTGGCAAACGAAGCTGAGTTCACTACTAAAAATACAGTTAGTACTTACTTTGCTTA
TCGTGCCAATCAGCGGTGCGTTTTTCTCTGGAACAAGTTTGGTATCCATCGCTTATAACCTAGTTTTCATTCCTTGGTTT
GGTTTTTTGGTCGTCCCTTTGATGTTCCTAGCGCTGATTGTAACCCCAATTTCTTTTCAGTTGGCTGGTATGCTTTGGCA
ACTGGTGGATTGGGTGTTGTTGCCACTGACATGGTCATTACAGTTTGCGGTCGGGAGTTGGCATTTTGTAAGTTTGCCTT
TGACCTTAACGATACTCGCAGTTGCCACCTGTGGATTATTGAGACGTTTTTTGAATCGGGGCTCGTTCGTTACGTTAGTA
ATTCTAGTAAAGGGTGTCGCCCTATTTTATGAGCGTACAACGAGTTCTTGGAGAGTGGACGTGTTAGATGTAGGACACGG
CCTTGCGGTATTAATTGAGAAGCATGGAAAGGTGACGCTTTACGACACAGGCAAAGCTTGGAACTCAGGGAGCATAGCGC
AACAAGTTCTCTCTCCTGTATTACATCGCAGAGGTTTTGGCACCATTGATATGTTCATTATCAGTCATGCTGATTCGGAT
CATGCAGGAGGTAGGCAGTATATAGAGCAGCACTTTTCGCCAGCGCAGAAATTCAGCAGTCAAAACTACGCTAACTACCA
ATCTTGTATTGCGGGTGAACGCTGGTATTGGCAGGCGCTTTATTTTGAAGTCTTATGGCCACCTAAGCAGGTAAACCGTG
CTTATAATCCTCATTCGTGTGTTGTTCGAGTTGTGGATAAGGAATCGGGTTTTAAATTGCTTTTGACTGGCGATATTGAA
GCCGTCAGTGAGTGGATACTTATGCGTGAACCCAACAAGCTAGAGAGTGATGTTATGCTTGTTCCTCATCATGGTAGCAA
GAGCTCTTCGAATCCAAAATTTGTTCAAACTGTCTCTCCAACCTTGGCGATAGCCTCGTTAGCAAAAAGTAATCAATGGG
GCATGCCTGCTGAAAATGTTTTATCGGCTTATCAGGCAGCAAGTGCCCACTGGCTGGATACGGGAAATCATGGGCAGGTA
TCGGTGTTTATTAAGCGAGACAATTGGTACTTTGAAGCTAAACGTAGTGAGACATTTGAGCCTTGGTATAGGCAGATGCT
GCGTAAGGGAGTAGAATAA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (208-466)

• Metallo-beta-lactamase superfamily (Lactamase_B) (504-672)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comEC	Vibrio campbellii strain DS40M4	96.277	100	0.963
comEC	Vibrio parahaemolyticus RIMD 2210633	66.09	100	0.661
comEC	Vibrio cholerae strain A1552	41.09	100	0.411