Detailed information    

insolico Bioinformatically predicted

Overview


Name   coiA   Type   Machinery gene
Locus tag   FORC39_RS09995 Genome accession   NZ_CP015817
Coordinates   1943405..1944391 (-) Length   328 a.a.
NCBI ID   WP_000959288.1    Uniprot ID   -
Organism   Staphylococcus aureus strain FORC_039     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 1938405..1949391
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC39_RS09970 (FORC39_1748) - 1938665..1939012 (-) 348 WP_001242102.1 hypothetical protein -
  FORC39_RS09975 (FORC39_1749) - 1939198..1939791 (+) 594 WP_000224619.1 CYTH domain-containing protein -
  FORC39_RS09980 (FORC39_1750) - 1939895..1940260 (+) 366 WP_000214070.1 truncated hemoglobin YjbI -
  FORC39_RS09985 (FORC39_1751) yjbH 1940283..1941089 (+) 807 WP_000896696.1 protease adaptor protein YjbH -
  FORC39_RS09990 (FORC39_1752) pepF 1941549..1943357 (-) 1809 WP_000082725.1 oligoendopeptidase F -
  FORC39_RS09995 (FORC39_1753) coiA 1943405..1944391 (-) 987 WP_000959288.1 competence protein CoiA Machinery gene
  FORC39_RS10000 (FORC39_1754) mecA 1944512..1945231 (-) 720 WP_001217728.1 adaptor protein MecA -
  FORC39_RS10005 (FORC39_1755) spxA 1945603..1945998 (-) 396 WP_000258003.1 transcriptional regulator SpxA -
  FORC39_RS10010 (FORC39_1756) trpS 1946293..1947282 (+) 990 WP_000448934.1 tryptophan--tRNA ligase -
  FORC39_RS10015 (FORC39_1757) opp4C 1947324..1948205 (-) 882 WP_001180274.1 oligopeptide ABC transporter permease -
  FORC39_RS10020 (FORC39_1758) opp4B 1948217..1949179 (-) 963 WP_000239820.1 oligopeptide ABC transporter permease -

Sequence


Protein


Download         Length: 328 a.a.        Molecular weight: 38899.50 Da        Isoelectric Point: 9.5881

>NTDB_id=182267 FORC39_RS09995 WP_000959288.1 1943405..1944391(-) (coiA) [Staphylococcus aureus strain FORC_039]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPFTRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFTINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLVNDNLNYFKLKKFIVALESKTAIIEKLINNYLNICSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=182267 FORC39_RS09995 WP_000959288.1 1943405..1944391(-) (coiA) [Staphylococcus aureus strain FORC_039]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCATTCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGAAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCA
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAATGACAACCTTAATTATTTTAAACTGAAAA
AATTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

98.78

100

0.988

  coiA Staphylococcus aureus N315

98.171

100

0.982


Multiple sequence alignment