Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   B1780_RS01125 Genome accession   NZ_CP019838
Coordinates   214708..215481 (+) Length   257 a.a.
NCBI ID   WP_002882553.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni strain ATCC 33560     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 209708..220481
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B1780_RS01110 (B1780_01110) - 210557..212491 (-) 1935 WP_002882550.1 RNB domain-containing ribonuclease -
  B1780_RS01115 (B1780_01115) ilvC 212610..213632 (+) 1023 WP_002855220.1 ketol-acid reductoisomerase -
  B1780_RS01120 (B1780_01120) - 213636..214718 (+) 1083 WP_002882551.1 divergent polysaccharide deacetylase family protein -
  B1780_RS01125 (B1780_01125) dprA 214708..215481 (+) 774 WP_002882553.1 DNA-processing protein DprA Machinery gene
  B1780_RS01130 (B1780_01130) dprB 215478..215861 (+) 384 WP_002854812.1 Holliday junction resolvase RuvX Machinery gene
  B1780_RS01135 (B1780_01135) - 215890..216729 (+) 840 WP_079263865.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  B1780_RS01140 (B1780_01140) msrA 216905..217402 (-) 498 WP_002855174.1 peptide-methionine (S)-S-oxide reductase MsrA -
  B1780_RS01145 (B1780_01145) ppa 217443..217961 (-) 519 WP_002882557.1 inorganic diphosphatase -
  B1780_RS01150 (B1780_01150) adk 217971..218549 (-) 579 WP_002872374.1 adenylate kinase -
  B1780_RS01155 (B1780_01155) aspS 218546..220297 (-) 1752 WP_002882559.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28830.70 Da        Isoelectric Point: 7.6514

>NTDB_id=182069 B1780_RS01125 WP_002882553.1 214708..215481(+) (dprA) [Campylobacter jejuni subsp. jejuni strain ATCC 33560]
MASEILPDEFLELFKDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTRNCVFSLASMLKNAHLCVVSGGALGVDITA
SMAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
AKLALELNKPLYVLPQRLGESTATNLLLKENKAKLICDFKEFVSEFASIDMNQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLV

Nucleotide


Download         Length: 774 bp        

>NTDB_id=182069 B1780_RS01125 WP_002882553.1 214708..215481(+) (dprA) [Campylobacter jejuni subsp. jejuni strain ATCC 33560]
ATGGCAAGTGAAATTTTGCCTGATGAATTTTTAGAACTTTTTAAAGATTTAAAAAAGCCTCCTAAAAAATTGCACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATCGCTATTATAGGTTCAAGGCGTATGAGTGTTTATACGAGAAATTGTG
TTTTTTCTTTAGCGAGTATGCTTAAAAATGCTCATCTTTGTGTGGTAAGTGGCGGTGCTTTGGGTGTGGATATCACCGCA
AGTATGGCGGCTATGCCAAATACTATAGGTATTTTTGCCAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAGCAAATTTATGAAAATGCTTTAGCTTTAAGCGAATACGAAGATGATTATTTGCCAAAAAATTATGACTTTTTAC
TAAGAAATCGTTTGGTTATTGCTTTAAGTAAGGCCGTTGTGGTTGCACAAGCAGATATAAAAAGTGGTTCTATGCAAAGT
GCAAAACTTGCTTTAGAACTCAATAAGCCTTTATATGTTTTACCGCAAAGACTAGGAGAAAGCACAGCAACTAATTTACT
TTTAAAGGAAAATAAAGCAAAGTTAATTTGTGATTTTAAAGAATTTGTAAGTGAATTTGCAAGTATAGATATGAATCAAG
ATGAGTTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATAGAAGGGCTTTTTATAAGGGTTTTAGTATGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

99.609

99.611

0.992
  dprA Helicobacter pylori 26695

48.333

93.385

0.451

Multiple sequence alignment