Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   B1780_RS01130 Genome accession   NZ_CP019838
Coordinates   215478..215861 (+) Length   127 a.a.
NCBI ID   WP_002854812.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni strain ATCC 33560     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 210478..220861
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B1780_RS01110 (B1780_01110) - 210557..212491 (-) 1935 WP_002882550.1 RNB domain-containing ribonuclease -
  B1780_RS01115 (B1780_01115) ilvC 212610..213632 (+) 1023 WP_002855220.1 ketol-acid reductoisomerase -
  B1780_RS01120 (B1780_01120) - 213636..214718 (+) 1083 WP_002882551.1 divergent polysaccharide deacetylase family protein -
  B1780_RS01125 (B1780_01125) dprA 214708..215481 (+) 774 WP_002882553.1 DNA-processing protein DprA Machinery gene
  B1780_RS01130 (B1780_01130) dprB 215478..215861 (+) 384 WP_002854812.1 Holliday junction resolvase RuvX Machinery gene
  B1780_RS01135 (B1780_01135) - 215890..216729 (+) 840 WP_079263865.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  B1780_RS01140 (B1780_01140) msrA 216905..217402 (-) 498 WP_002855174.1 peptide-methionine (S)-S-oxide reductase MsrA -
  B1780_RS01145 (B1780_01145) ppa 217443..217961 (-) 519 WP_002882557.1 inorganic diphosphatase -
  B1780_RS01150 (B1780_01150) adk 217971..218549 (-) 579 WP_002872374.1 adenylate kinase -
  B1780_RS01155 (B1780_01155) aspS 218546..220297 (-) 1752 WP_002882559.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14159.67 Da        Isoelectric Point: 8.4950

>NTDB_id=182070 B1780_RS01130 WP_002854812.1 215478..215861(+) (dprB) [Campylobacter jejuni subsp. jejuni strain ATCC 33560]
MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALEYGIADTRKKDGKLDSLAAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=182070 B1780_RS01130 WP_002854812.1 215478..215861(+) (dprB) [Campylobacter jejuni subsp. jejuni strain ATCC 33560]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCATAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCTAATGAAATCAAAAATTTACTTAAAATACATGAAATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGCGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGTTTTGTAGATGAAAGCGGAACAAGTAAAGAAGCTTTAGAATACGGCATAGCCGATACGCGCAA
AAAAGATGGTAAATTAGATTCTTTAGCTGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.094

100

0.441