Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   B1K54_RS19685 Genome accession   NZ_CP019798
Coordinates   4366912..4367583 (-) Length   223 a.a.
NCBI ID   WP_030838780.1    Uniprot ID   A0ABX3G692
Organism   Streptomyces sp. fd1-xmd     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4361912..4372583
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B1K54_RS19665 (B1K54_19635) - 4362651..4363490 (+) 840 WP_060177059.1 hypothetical protein -
  B1K54_RS19670 (B1K54_19640) - 4363592..4364800 (-) 1209 WP_078094755.1 cytochrome P450 -
  B1K54_RS19675 (B1K54_19645) vraR 4364830..4365489 (-) 660 WP_030838786.1 response regulator Regulator
  B1K54_RS19680 (B1K54_19650) - 4365486..4366823 (-) 1338 WP_060177057.1 sensor histidine kinase -
  B1K54_RS19685 (B1K54_19655) vraR 4366912..4367583 (-) 672 WP_030838780.1 response regulator Regulator
  B1K54_RS19690 (B1K54_19660) - 4367580..4368941 (-) 1362 WP_078094756.1 sensor histidine kinase -
  B1K54_RS19695 (B1K54_19665) - 4368934..4370127 (-) 1194 WP_078094757.1 acyltransferase family protein -
  B1K54_RS19700 (B1K54_19670) - 4370120..4371118 (-) 999 WP_225884887.1 alpha/beta hydrolase -
  B1K54_RS19705 (B1K54_19675) - 4371526..4371954 (+) 429 WP_413081797.1 HIT family protein -
  B1K54_RS19710 (B1K54_19680) - 4372036..4372407 (-) 372 WP_318658177.1 nuclear transport factor 2 family protein -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 23797.53 Da        Isoelectric Point: 4.7890

>NTDB_id=182029 B1K54_RS19685 WP_030838780.1 4366912..4367583(-) (vraR) [Streptomyces sp. fd1-xmd]
MSTPIKVMIADDQMMVRQGFTVLLNAQPDIEVVGQAVDGADAVAKASELAPDVVLMDIRMPGMGGIEATSVITRVPDAAV
KVLVLTTFDLDEYVYEALRAGASGFLLKDASADQLAEAVRVVAAGEALLSPNITKRLITEFSRLGAPRAPSRARIDVLTE
RETEVLSLIAQGLSNAEISAHLVLAEQTVKTHVSRILVKLGLRDRTQAAVFAYESGLIRPAGY

Nucleotide


Download         Length: 672 bp        

>NTDB_id=182029 B1K54_RS19685 WP_030838780.1 4366912..4367583(-) (vraR) [Streptomyces sp. fd1-xmd]
ATGAGCACCCCGATCAAGGTGATGATCGCCGACGACCAGATGATGGTGCGGCAGGGCTTCACCGTGCTTCTCAACGCCCA
GCCCGACATAGAGGTCGTGGGGCAGGCGGTGGACGGGGCGGACGCCGTCGCGAAGGCCTCCGAGCTGGCCCCGGACGTGG
TGCTCATGGACATCCGCATGCCGGGCATGGGCGGTATCGAGGCCACCTCGGTGATCACCCGTGTTCCCGACGCCGCGGTG
AAGGTGCTCGTCCTGACCACTTTCGACCTCGACGAGTACGTCTACGAGGCGCTGCGGGCCGGAGCCTCCGGGTTCCTGCT
GAAGGACGCCTCCGCGGACCAGCTCGCGGAGGCGGTACGGGTGGTGGCGGCCGGTGAGGCGCTGCTGTCGCCGAACATCA
CGAAGCGGCTGATCACGGAGTTCTCCCGGCTGGGGGCGCCGCGCGCGCCGTCGCGGGCCCGGATCGACGTGCTGACCGAG
CGGGAGACCGAGGTGCTGTCGCTGATCGCCCAGGGCCTGTCGAACGCGGAGATCTCCGCGCACCTGGTCCTGGCCGAGCA
GACCGTGAAGACCCATGTGAGCCGGATCCTGGTGAAGCTCGGCCTGCGGGACCGCACGCAGGCCGCGGTGTTCGCGTACG
AGAGCGGTCTGATCCGTCCGGCGGGCTACTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(156-212)

Response regulator receiver domain (Response_reg)

(7-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

45.161

97.309

0.439
  degU Bacillus subtilis subsp. subtilis str. 168

41.41

100

0.422

Multiple sequence alignment