Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   B1K54_RS19675 Genome accession   NZ_CP019798
Coordinates   4364830..4365489 (-) Length   219 a.a.
NCBI ID   WP_030838786.1    Uniprot ID   A0ABX3G293
Organism   Streptomyces sp. fd1-xmd     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4359830..4370489
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B1K54_RS19655 (B1K54_19625) - 4360048..4360923 (-) 876 WP_051699431.1 PP2C family protein-serine/threonine phosphatase -
  B1K54_RS19660 (B1K54_19630) - 4361184..4362467 (-) 1284 WP_030838794.1 adenylosuccinate synthase -
  B1K54_RS19665 (B1K54_19635) - 4362651..4363490 (+) 840 WP_060177059.1 hypothetical protein -
  B1K54_RS19670 (B1K54_19640) - 4363592..4364800 (-) 1209 WP_078094755.1 cytochrome P450 -
  B1K54_RS19675 (B1K54_19645) vraR 4364830..4365489 (-) 660 WP_030838786.1 response regulator Regulator
  B1K54_RS19680 (B1K54_19650) - 4365486..4366823 (-) 1338 WP_060177057.1 sensor histidine kinase -
  B1K54_RS19685 (B1K54_19655) vraR 4366912..4367583 (-) 672 WP_030838780.1 response regulator Regulator
  B1K54_RS19690 (B1K54_19660) - 4367580..4368941 (-) 1362 WP_078094756.1 sensor histidine kinase -
  B1K54_RS19695 (B1K54_19665) - 4368934..4370127 (-) 1194 WP_078094757.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 23605.42 Da        Isoelectric Point: 4.5722

>NTDB_id=182028 B1K54_RS19675 WP_030838786.1 4364830..4365489(-) (vraR) [Streptomyces sp. fd1-xmd]
MTIRVLIVDDQMMVREGFSVLLNAMDGIEVVGEAVDGREAIAQVAALRPDVVLMDIRMPVMNGLEATREIVAADTDAKVL
VLTTFDLDEYVYQALRAGASGFLLKDASARQLADGVRVVAAGEALLAPSVTKRLIAEFSKISEARKLADPAGVGELTERE
TEVLILIAQGLSNAEMADRLIVAESTIKTHVSRILVKLGLRDRTQAAVFAYETRLVTPA

Nucleotide


Download         Length: 660 bp        

>NTDB_id=182028 B1K54_RS19675 WP_030838786.1 4364830..4365489(-) (vraR) [Streptomyces sp. fd1-xmd]
ATGACGATCAGGGTGCTGATCGTCGACGACCAGATGATGGTCCGCGAGGGGTTCTCGGTTCTGCTGAACGCCATGGACGG
CATCGAGGTGGTGGGCGAGGCGGTCGACGGCCGGGAGGCCATCGCGCAGGTGGCGGCGCTGCGGCCGGACGTGGTGCTGA
TGGACATCCGGATGCCTGTGATGAACGGCTTGGAGGCGACGCGGGAGATCGTGGCGGCGGACACGGACGCGAAGGTGCTG
GTCCTGACGACCTTCGATCTCGACGAGTACGTGTACCAGGCGTTGCGGGCGGGGGCGTCCGGGTTCCTGCTGAAGGATGC
CTCGGCCCGTCAGCTGGCCGACGGCGTACGGGTGGTGGCGGCCGGGGAGGCTCTGCTGGCACCGTCGGTGACCAAGCGGC
TGATAGCGGAGTTCTCGAAGATCTCCGAGGCGCGCAAGCTCGCGGATCCGGCGGGGGTCGGCGAGCTGACGGAGCGGGAG
ACGGAGGTGCTGATCCTCATCGCGCAGGGCCTGTCGAACGCGGAGATGGCCGACCGGCTGATCGTCGCGGAGTCCACGAT
CAAGACCCATGTGAGCCGGATCCTGGTGAAGCTGGGCCTGCGGGACCGGACGCAGGCGGCGGTGTTCGCCTACGAGACCC
GCCTGGTGACACCGGCCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(156-210)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.907

98.63

0.443
  degU Bacillus subtilis subsp. subtilis str. 168

40.359

100

0.411