Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   B1K54_RS12535 Genome accession   NZ_CP019798
Coordinates   2798120..2799172 (-) Length   350 a.a.
NCBI ID   WP_030841083.1    Uniprot ID   A0ABX3G9V8
Organism   Streptomyces sp. fd1-xmd     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 2793120..2804172
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B1K54_RS12525 (B1K54_12490) rcrP 2794401..2796134 (+) 1734 WP_030841089.1 ABC transporter ATP-binding protein Regulator
  B1K54_RS12530 (B1K54_12495) rcrQ 2796131..2798053 (+) 1923 WP_076043593.1 ABC transporter ATP-binding protein Regulator
  B1K54_RS12535 (B1K54_12500) rpoS 2798120..2799172 (-) 1053 WP_030841083.1 RNA polymerase sigma factor Regulator
  B1K54_RS12540 (B1K54_12505) - 2799423..2799866 (+) 444 WP_078094202.1 hypothetical protein -
  B1K54_RS12545 (B1K54_12510) - 2799866..2801227 (+) 1362 WP_078094203.1 hypothetical protein -
  B1K54_RS12550 (B1K54_12515) - 2801231..2801695 (+) 465 WP_225884742.1 hypothetical protein -
  B1K54_RS12555 (B1K54_12520) - 2801747..2803840 (-) 2094 WP_078094204.1 molybdopterin oxidoreductase family protein -
  B1K54_RS36490 - 2803887..2804048 (-) 162 WP_159050726.1 hypothetical protein -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 39299.83 Da        Isoelectric Point: 5.1451

>NTDB_id=182012 B1K54_RS12535 WP_030841083.1 2798120..2799172(-) (rpoS) [Streptomyces sp. fd1-xmd]
MQTRTLTVNASESSEAKAVDEEPEVLELIEPVPVQRSRDSDGSGAGAGPSADLFRQYLREIGRIPLLTAAEEVDLARRVE
AGLFAEEKLGTTPDLDSQLAVDLDRLVVMGRMAKRRLIESNLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYA
RGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGYEPTAEEVAVHLELTPERVLEVLRLAQ
EPVSLHAPVGEEDDVALGDLIEDGDAASPVESAAFFLLREHLEAVLSTLGERERKVVQLRYGLADGRPRTLEEIGRIFGV
TRERIRQIESKTLNKLRDHAFADQLRGYLD

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=182012 B1K54_RS12535 WP_030841083.1 2798120..2799172(-) (rpoS) [Streptomyces sp. fd1-xmd]
GTGCAGACCCGGACCCTGACCGTGAACGCGAGCGAGTCCTCGGAGGCCAAAGCCGTGGACGAAGAGCCCGAGGTACTGGA
GCTGATCGAGCCGGTGCCTGTGCAGCGCAGCCGGGACAGCGACGGGAGCGGCGCCGGAGCGGGGCCCTCCGCCGACCTGT
TCCGGCAGTACCTGCGCGAGATAGGCAGGATCCCGCTGCTCACCGCCGCCGAGGAGGTGGACCTGGCGCGGCGCGTCGAA
GCCGGCCTGTTCGCCGAGGAGAAGCTCGGCACCACCCCCGACCTCGACTCCCAGCTCGCCGTCGACCTCGACCGGCTCGT
CGTCATGGGACGCATGGCCAAACGCCGCCTCATCGAGTCGAATCTGCGGCTGGTCGTCTCCGTCGCGAAGCGGTACGTCG
GCCGCGGGCTCACCATGCTCGACCTGGTCCAGGAGGGGAACCTCGGGCTGATCCGGGCCGTCGAGAAGTTCGACTACGCC
CGCGGGTACAAGTTCTCCACCTACGCCACCTGGTGGATCCGGCAGGCGATGTCCCGGGCCCTCGCCGACCAGGCCCGGAC
CATCCGGGTGCCCGTCCACGTCGTCGAGCTCATCAACCGCGTCGTCCGCGTCCAGCGCCGCATGCTCCAGGAACGCGGCT
ACGAGCCCACCGCCGAAGAGGTCGCCGTCCACCTGGAGCTCACCCCCGAGCGGGTCCTGGAAGTGTTGCGCCTCGCCCAG
GAGCCGGTCTCCCTGCACGCCCCCGTCGGCGAGGAGGACGACGTCGCGCTCGGCGATCTCATCGAGGACGGCGACGCCGC
CTCCCCCGTGGAATCAGCCGCCTTCTTCCTGCTGCGCGAGCACCTCGAAGCGGTCCTGTCGACCCTCGGCGAACGCGAGC
GCAAGGTCGTGCAGTTGCGGTACGGGCTCGCCGACGGACGGCCGCGCACCCTGGAGGAGATCGGCCGGATCTTCGGCGTG
ACGCGCGAGCGGATCCGCCAGATCGAGTCCAAGACCCTCAACAAGCTGCGCGACCACGCCTTCGCCGACCAGCTGCGCGG
CTACCTCGACTGA

Domains

Predicted by InterProScan.

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(52-85)

Sigma-70, region 4 (Sigma70_r4)

(285-337)

Sigma-70 region 3 (Sigma70_r3)

(196-272)

Sigma-70 region 2 (Sigma70_r2)

(117-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

44.027

83.714

0.369

Multiple sequence alignment