Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   B1K54_RS12525 Genome accession   NZ_CP019798
Coordinates   2794401..2796134 (+) Length   577 a.a.
NCBI ID   WP_030841089.1    Uniprot ID   -
Organism   Streptomyces sp. fd1-xmd     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2789401..2801134
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B1K54_RS12485 (B1K54_12450) - 2789703..2790512 (+) 810 WP_225884740.1 leucine-rich repeat domain-containing protein -
  B1K54_RS12490 (B1K54_12455) - 2790580..2791116 (-) 537 WP_078094200.1 hypothetical protein -
  B1K54_RS12495 (B1K54_12460) - 2791206..2791553 (-) 348 WP_078094201.1 hypothetical protein -
  B1K54_RS12515 (B1K54_12480) - 2792415..2792720 (+) 306 WP_030841096.1 hypothetical protein -
  B1K54_RS12520 (B1K54_12485) - 2792815..2794263 (+) 1449 WP_030841092.1 FGGY family carbohydrate kinase -
  B1K54_RS12525 (B1K54_12490) rcrP 2794401..2796134 (+) 1734 WP_030841089.1 ABC transporter ATP-binding protein Regulator
  B1K54_RS12530 (B1K54_12495) rcrQ 2796131..2798053 (+) 1923 WP_076043593.1 ABC transporter ATP-binding protein Regulator
  B1K54_RS12535 (B1K54_12500) rpoS 2798120..2799172 (-) 1053 WP_030841083.1 RNA polymerase sigma factor Regulator
  B1K54_RS12540 (B1K54_12505) - 2799423..2799866 (+) 444 WP_078094202.1 hypothetical protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62344.22 Da        Isoelectric Point: 4.9112

>NTDB_id=182010 B1K54_RS12525 WP_030841089.1 2794401..2796134(+) (rcrP) [Streptomyces sp. fd1-xmd]
MLIRLLRTHLGPYRKPVAALVLLQLLQTSASLYLPTLNADIIDNGVVNGDTGYILRFGALMLGVSLIQLVCNVGAVYYGA
RTAAAVGRDVRAAVFDRVQSFSARELGQFGAPSLITRTTNDVQQVQMLVLMTFTLMVSAPIMCVGGIAMALSLDVQLSGV
LLAVVPVLGISVGAVVFRTRPLFRQMQERLDTVNRVLREQITGNRVIRAFVRDDYEKDRFREANADLTGVSLAAGKLLAL
MFPTVIVVVNISSVAVIWFGAMRVDSGGMEIGQLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLDTESSVVP
PADPVRELARSGLLELRGADFRYPGAEAPVLRGVDLVARPGETTAVIGSTGSGKSTLLGLVPRLFDATGGEVLVDGEDVR
RLDPELLAKTVGMVPQKPYLFSGTIASNLRYGRPDASDEELWQALEVAQAKEFVSALEGGLQAPVTQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALARETEDATVVIVAQRVATIRDADRIIVLDEGQVVGEGRHHELMAGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=182010 B1K54_RS12525 WP_030841089.1 2794401..2796134(+) (rcrP) [Streptomyces sp. fd1-xmd]
GTGCTCATACGACTTCTGCGGACCCACCTGGGTCCGTACCGGAAACCCGTCGCGGCGCTGGTCCTGCTGCAACTGCTGCA
GACGAGCGCCAGCCTCTACCTGCCCACCCTCAACGCCGACATCATCGACAACGGTGTCGTCAACGGCGACACCGGATACA
TCCTGCGCTTCGGCGCGCTGATGCTCGGCGTCTCACTCATCCAGCTCGTCTGCAACGTCGGGGCCGTCTACTACGGTGCC
CGCACGGCCGCGGCCGTGGGGCGCGACGTCCGCGCCGCCGTCTTCGACCGGGTCCAGAGCTTCTCCGCGCGGGAGCTCGG
CCAGTTCGGCGCCCCGTCCCTGATCACCCGTACGACGAACGACGTCCAGCAGGTCCAGATGCTGGTGCTGATGACCTTCA
CCCTGATGGTGTCGGCGCCGATCATGTGCGTCGGCGGCATCGCCATGGCGCTCTCGCTGGACGTGCAGCTGTCGGGCGTC
CTGCTGGCCGTGGTCCCCGTCCTCGGGATCTCGGTCGGCGCCGTCGTCTTCAGGACGCGGCCGCTGTTCCGCCAGATGCA
GGAGCGCCTGGACACCGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTGATCCGCGCCTTCGTCCGCGACG
ACTACGAGAAGGACCGCTTCCGCGAGGCCAACGCGGACCTCACCGGCGTCTCGCTGGCCGCGGGCAAGCTGCTGGCCCTC
ATGTTCCCGACCGTGATCGTCGTCGTGAACATCTCCAGCGTCGCCGTCATCTGGTTCGGCGCGATGCGCGTCGACAGCGG
CGGCATGGAGATCGGCCAGCTGACGGCGTTCCTGGCCTACCTCATGCAGATCGTCATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTCTGCGCCGAACGCATCCAGGAGGTGCTGGACACCGAGTCCAGCGTGGTCCCG
CCCGCCGACCCGGTGCGCGAACTCGCCCGCAGTGGACTCCTGGAGCTGCGCGGCGCCGACTTCCGCTACCCGGGCGCCGA
GGCCCCGGTCCTGCGCGGCGTGGACCTGGTGGCCCGCCCCGGCGAGACCACGGCGGTGATCGGCTCCACCGGAAGCGGCA
AGTCCACGCTGCTCGGCCTGGTCCCCCGGCTGTTCGACGCGACCGGCGGCGAGGTGCTCGTGGACGGCGAGGACGTACGC
CGGCTCGACCCCGAACTGCTGGCGAAGACGGTCGGCATGGTCCCGCAGAAGCCCTACCTCTTCTCCGGCACCATCGCCTC
GAACCTGCGCTACGGGCGCCCGGACGCCAGCGACGAAGAGCTGTGGCAGGCCCTGGAGGTGGCCCAGGCCAAGGAGTTCG
TCTCGGCGCTGGAGGGCGGCCTTCAGGCGCCCGTCACGCAGGGCGGCACGAACGTCTCCGGCGGCCAGCGCCAGCGCCTG
GCCATCGCCCGCACGCTCGTGCAGCGCCCGGAGATCTACCTCTTCGACGACTCCTTCTCGGCCCTGGACTACGCGACGGA
CGCGGCGCTGCGCGCGGCGCTCGCCCGCGAGACCGAGGACGCGACCGTGGTCATCGTCGCCCAGCGGGTCGCGACCATCC
GCGACGCCGACCGGATCATCGTCCTGGACGAGGGGCAGGTCGTGGGTGAGGGCCGCCACCACGAGCTGATGGCCGGCAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAGGCGGAGGCCGCATGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(19-288)

ABC transporter (ABC_tran)

(352-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

41.636

93.241

0.388

Multiple sequence alignment