Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   B1K54_RS12530 Genome accession   NZ_CP019798
Coordinates   2796131..2798053 (+) Length   640 a.a.
NCBI ID   WP_076043593.1    Uniprot ID   A0ABX3G8M9
Organism   Streptomyces sp. fd1-xmd     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2791131..2803053
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B1K54_RS12495 (B1K54_12460) - 2791206..2791553 (-) 348 WP_078094201.1 hypothetical protein -
  B1K54_RS12515 (B1K54_12480) - 2792415..2792720 (+) 306 WP_030841096.1 hypothetical protein -
  B1K54_RS12520 (B1K54_12485) - 2792815..2794263 (+) 1449 WP_030841092.1 FGGY family carbohydrate kinase -
  B1K54_RS12525 (B1K54_12490) rcrP 2794401..2796134 (+) 1734 WP_030841089.1 ABC transporter ATP-binding protein Regulator
  B1K54_RS12530 (B1K54_12495) rcrQ 2796131..2798053 (+) 1923 WP_076043593.1 ABC transporter ATP-binding protein Regulator
  B1K54_RS12535 (B1K54_12500) rpoS 2798120..2799172 (-) 1053 WP_030841083.1 RNA polymerase sigma factor Regulator
  B1K54_RS12540 (B1K54_12505) - 2799423..2799866 (+) 444 WP_078094202.1 hypothetical protein -
  B1K54_RS12545 (B1K54_12510) - 2799866..2801227 (+) 1362 WP_078094203.1 hypothetical protein -
  B1K54_RS12550 (B1K54_12515) - 2801231..2801695 (+) 465 WP_225884742.1 hypothetical protein -

Sequence

Protein


Download         Length: 640 a.a.        Molecular weight: 68927.35 Da        Isoelectric Point: 5.2952

>NTDB_id=182011 B1K54_RS12530 WP_076043593.1 2796131..2798053(+) (rcrQ) [Streptomyces sp. fd1-xmd]
MSGPGGRMMMGPAQRSLDFKGSGRRLLAQIAQDRAKLWGMVLAVVGSVACAVVGPKILGEATDLVFAGIVGREMPAGVTK
QQALDGMRARGEDGMADMLSGTDFTPGRGIDFGAVGAVAIWALVVFTLAGLLMLVATRLSNHVMNGTLYRMREELQAKLS
RLPLAYFDQQKRGEVLSRATNDIDNIGQTLQQTMGQLLNSLLTIVGVLAMMFWISPLLALVAVGTVPVSVYVAAKIGKKS
QPQFVEQWKTTGALNAHIEEMYSGHNLVKVFGRQKESAALFAEQNEALYRASFKAQLVSGIMQPVMFFISNINYVLIAVV
GGLRVASGTLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERVYELLDAPEQERDADVPERPQELRGQVTFDKV
AFRYEPDRPLIENLSLSVDPGHTVAIVGPTGAGKTTLVNLLMRFYEVTGGEIALDGVDIAKMTREELRGGIGMVLQDTWL
FGGTIAENIAYGASRPVTRAEIEEAARAAHADRFIRTLPDGYDTVLDDEGSGVSAGEKQLITIARAFLSDPVILVLDEAT
SSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADLILVMESGSIVEQGTHEELLASGGAYARLYAAQFAQAVAEVD

Nucleotide


Download         Length: 1923 bp        

>NTDB_id=182011 B1K54_RS12530 WP_076043593.1 2796131..2798053(+) (rcrQ) [Streptomyces sp. fd1-xmd]
ATGAGCGGGCCCGGAGGACGGATGATGATGGGGCCGGCCCAGCGGTCCCTGGACTTCAAGGGATCGGGCCGGCGGCTGCT
GGCCCAGATCGCGCAGGACCGGGCCAAGCTGTGGGGCATGGTCCTGGCCGTCGTCGGCAGCGTCGCCTGCGCGGTCGTCG
GACCGAAGATCCTCGGCGAGGCGACCGACCTGGTCTTCGCGGGGATCGTCGGCCGGGAGATGCCGGCCGGTGTGACCAAG
CAGCAGGCGCTGGACGGGATGCGCGCCCGCGGCGAGGACGGCATGGCGGACATGCTGTCCGGCACCGACTTCACCCCGGG
CCGGGGCATCGACTTCGGCGCGGTCGGGGCCGTGGCGATCTGGGCGCTGGTGGTCTTCACCCTGGCGGGCCTGCTGATGC
TGGTCGCGACCCGGCTGTCGAACCACGTCATGAACGGCACCCTCTACCGGATGCGCGAGGAGCTCCAGGCGAAGCTGTCG
CGGCTGCCGCTGGCGTACTTCGACCAGCAAAAGCGCGGCGAGGTGCTGAGCCGGGCCACCAACGACATCGACAACATCGG
CCAGACGCTCCAGCAGACGATGGGTCAGCTGCTGAATTCGCTGCTGACCATCGTCGGCGTGCTCGCGATGATGTTCTGGA
TCTCGCCGCTGCTGGCGCTGGTCGCGGTGGGGACCGTACCGGTCTCCGTCTACGTCGCCGCGAAGATCGGCAAGAAGTCG
CAGCCGCAGTTCGTGGAGCAGTGGAAGACGACCGGAGCGCTCAACGCCCACATCGAGGAGATGTACTCGGGGCACAACCT
GGTCAAGGTCTTCGGCCGGCAGAAGGAGTCCGCGGCGCTCTTCGCCGAGCAGAACGAGGCGCTGTACCGGGCCTCGTTCA
AGGCGCAGCTGGTCAGCGGCATCATGCAGCCGGTGATGTTCTTCATCTCGAACATCAACTACGTGCTGATCGCGGTGGTG
GGCGGGCTGCGCGTCGCGTCCGGCACCCTGTCGATCGGTGACGTGCAGGCCTTCATCCAGTACTCGCGGCAGTTCTCGAT
GCCGCTGACGCAGGTCGCGTCGATGGCCAACCTCGTGCAGTCCGGTGTCGCCTCGGCGGAGCGGGTCTACGAGCTGCTGG
ACGCCCCGGAGCAGGAGCGTGACGCCGACGTGCCGGAGCGCCCGCAGGAGCTGCGCGGCCAGGTCACCTTCGACAAGGTG
GCCTTCCGCTACGAGCCGGACCGGCCGCTGATCGAGAACCTCTCGCTCTCGGTGGACCCGGGCCACACGGTCGCGATCGT
CGGCCCGACGGGCGCCGGCAAGACGACCCTGGTGAACCTGCTGATGCGGTTCTACGAGGTGACGGGCGGGGAGATCGCCC
TGGACGGGGTGGACATCGCCAAGATGACCCGCGAGGAGCTGCGCGGCGGCATCGGCATGGTGCTCCAGGACACCTGGCTG
TTCGGCGGGACCATCGCGGAGAACATCGCCTACGGCGCTTCGCGCCCCGTCACGCGGGCCGAGATCGAGGAGGCGGCGCG
GGCCGCGCACGCGGACCGGTTCATCCGGACGCTGCCGGACGGCTACGACACCGTGCTGGACGACGAGGGATCGGGCGTCA
GCGCGGGCGAGAAGCAGCTGATCACCATCGCCCGGGCGTTCCTGTCGGATCCGGTGATCCTGGTCCTCGACGAGGCGACG
AGCTCGGTGGACACCCGTACCGAGGTGCTGATCCAGAAGGCGATGGCGCGGCTCGCGCACGGCCGTACGTCCTTCGTGAT
CGCGCACCGGCTCTCCACGATCCGCGACGCCGACCTGATCCTGGTGATGGAGAGCGGCTCGATCGTGGAGCAGGGCACGC
ACGAGGAGCTGCTGGCGTCGGGCGGCGCCTACGCCCGCCTGTACGCGGCGCAGTTCGCCCAGGCGGTCGCGGAGGTCGAC
TGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(412-561)

ABC transporter transmembrane region (ABC_membrane)

(56-349)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

39.871

97.188

0.387