Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   B0915_RS19790 Genome accession   NZ_CP019778
Coordinates   3828179..3828811 (+) Length   210 a.a.
NCBI ID   WP_066009633.1    Uniprot ID   -
Organism   Escherichia coli strain NCTC86     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3823179..3833811
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B0915_RS19755 (B0915_20165) yheS 3823348..3825261 (+) 1914 WP_000634798.1 ABC transporter ATP-binding protein -
  B0915_RS19760 (B0915_20170) yheT 3825261..3826283 (+) 1023 WP_000057356.1 hydrolase -
  B0915_RS19765 (B0915_20175) yheU 3826277..3826495 (+) 219 WP_000907085.1 YheU family protein -
  B0915_RS19770 (B0915_20180) prkB 3826549..3827418 (+) 870 Protein_3654 phosphoribulokinase -
  B0915_RS19780 (B0915_20190) yhfA 3827473..3827877 (-) 405 WP_001148908.1 OsmC family protein -
  B0915_RS19790 (B0915_20200) crp 3828179..3828811 (+) 633 WP_066009633.1 cAMP-activated global transcriptional regulator CRP Regulator
  B0915_RS19795 (B0915_20205) yhfK 3828862..3830952 (+) 2091 WP_141086593.1 YccS/YhfK family putative transporter -
  B0915_RS19800 (B0915_20210) argD 3831019..3832239 (-) 1221 WP_066009637.1 bifunctional acetylornithine/succinyldiaminopimelate transaminase -
  B0915_RS19805 (B0915_20215) pabA 3832325..3832888 (-) 564 WP_000601847.1 aminodeoxychorismate synthase component 2 -
  B0915_RS19810 (B0915_20220) fic 3832920..3833522 (-) 603 WP_001280641.1 putative adenosine monophosphate-protein transferase Fic -
  B0915_RS19815 (B0915_20225) yhfG 3833512..3833679 (-) 168 WP_000736862.1 YhfG family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23671.39 Da        Isoelectric Point: 7.4003

>NTDB_id=181890 B0915_RS19790 WP_066009633.1 3828179..3828811(+) (crp) [Escherichia coli strain NCTC86]
MVLGEPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTSRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=181890 B0915_RS19790 WP_066009633.1 3828179..3828811(+) (crp) [Escherichia coli strain NCTC86]
ATGGTGCTTGGCGAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAA
GAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAG
ACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGC
CAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGAT
TCAGGTAAACCCGGACATTCTGATGCGTTTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCA
ACCTGGCGTTCCTCGACGTGACGAGCCGCATTGCACAGACTCTGCTGAATCTGGCAAAACAACCAGACGCTATGACTCAC
CCGGACGGTATGCAAATCAAAATTACCCGTCAGGAAATTGGTCAGATTGTCGGCTGTTCTCGTGAAACCGTGGGACGCAT
TCTGAAGATGCTGGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(143-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

94.762

100

0.948
  crp Haemophilus influenzae Rd KW20

77.451

97.143

0.752
  crp Acinetobacter baumannii D1279779

47.739

94.762

0.452

Multiple sequence alignment