Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ESP131_RS02130 Genome accession   NZ_CP015731
Coordinates   415134..415652 (-) Length   172 a.a.
NCBI ID   WP_023469850.1    Uniprot ID   -
Organism   Exiguobacterium sp. U13-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 410134..420652
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ESP131_RS02110 (ESP131_02105) dnaB 410928..412280 (-) 1353 WP_023469846.1 replicative DNA helicase -
  ESP131_RS02115 (ESP131_02110) rplI 412300..412743 (-) 444 WP_023469847.1 50S ribosomal protein L9 -
  ESP131_RS02120 (ESP131_02115) - 412740..414725 (-) 1986 WP_029343021.1 DHH family phosphoesterase -
  ESP131_RS02125 (ESP131_02120) rpsR 414860..415090 (-) 231 WP_023469849.1 30S ribosomal protein S18 -
  ESP131_RS02130 (ESP131_02125) ssb 415134..415652 (-) 519 WP_023469850.1 single-stranded DNA-binding protein Machinery gene
  ESP131_RS02135 (ESP131_02130) rpsF 415676..415963 (-) 288 WP_023469851.1 30S ribosomal protein S6 -
  ESP131_RS02140 (ESP131_02135) ychF 416084..417184 (-) 1101 WP_029343022.1 redox-regulated ATPase YchF -
  ESP131_RS02145 (ESP131_02140) - 417413..417601 (-) 189 WP_023469853.1 DUF951 domain-containing protein -
  ESP131_RS02150 (ESP131_02145) - 417573..418502 (-) 930 WP_023469854.1 mechanosensitive ion channel family protein -
  ESP131_RS02155 (ESP131_02150) yyaC 418686..419303 (+) 618 WP_034786343.1 spore protease YyaC -
  ESP131_RS02160 (ESP131_02155) - 419340..420104 (-) 765 WP_029343024.1 ParB/RepB/Spo0J family partition protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18544.19 Da        Isoelectric Point: 4.9901

>NTDB_id=181862 ESP131_RS02130 WP_023469850.1 415134..415652(-) (ssb) [Exiguobacterium sp. U13-1]
MINRVVLVGRLTRDPEMRYTQSGIAVTRFTLACDRPFTGQDGKREADFIDCVVWRKQAENVAQYLKKGSLAGVEGRLQIS
SYDDKEGQRRYRAEVVADSVRFLESRNASRSSDGSEGYASSTGGNGNAAGWGSQQQQNNSSSPAPASSNSGFGADPFSGG
SSIDLSDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=181862 ESP131_RS02130 WP_023469850.1 415134..415652(-) (ssb) [Exiguobacterium sp. U13-1]
ATGATTAACCGCGTCGTTTTAGTCGGTCGGTTAACTCGTGACCCGGAAATGCGTTATACGCAGAGCGGGATTGCGGTAAC
GCGATTCACACTCGCATGTGACCGTCCTTTCACAGGGCAAGATGGGAAGCGAGAAGCTGATTTCATCGATTGCGTCGTTT
GGCGCAAGCAAGCAGAGAACGTTGCTCAGTATTTGAAGAAAGGTAGTCTTGCTGGTGTAGAGGGTCGCCTCCAGATTAGC
AGCTACGACGATAAAGAAGGGCAACGCCGTTATCGTGCGGAAGTCGTCGCTGATAGCGTCCGCTTCCTTGAGTCACGTAA
CGCGAGCCGTTCTTCGGATGGTAGCGAAGGCTACGCTTCATCTACTGGTGGAAACGGGAATGCTGCAGGATGGGGTTCAC
AGCAACAGCAGAACAACTCTTCCTCGCCAGCACCCGCTTCATCGAATTCGGGCTTCGGCGCTGATCCGTTCAGCGGTGGT
AGTTCGATCGACCTTTCAGATGACGATCTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

53.409

100

0.547
  ssbA Bacillus subtilis subsp. subtilis str. 168

52.222

100

0.547

Multiple sequence alignment