Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   A7318_RS15705 Genome accession   NZ_CP015639
Coordinates   3517112..3519337 (+) Length   741 a.a.
NCBI ID   WP_069077616.1    Uniprot ID   -
Organism   Pseudomonas lurida strain L228     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3512112..3524337
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7318_RS15690 (A7318_15685) - 3514379..3515107 (+) 729 WP_034106783.1 response regulator transcription factor -
  A7318_RS15695 (A7318_15690) - 3515094..3516464 (+) 1371 WP_069077615.1 sensor histidine kinase -
  A7318_RS15700 (A7318_15695) - 3516461..3516976 (-) 516 WP_034106781.1 DUF2062 domain-containing protein -
  A7318_RS15705 (A7318_15700) comA 3517112..3519337 (+) 2226 WP_069077616.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  A7318_RS15710 (A7318_15705) exbB 3519434..3520069 (+) 636 WP_012724911.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  A7318_RS15715 (A7318_15710) - 3520066..3520494 (+) 429 WP_034106779.1 ExbD/TolR family protein -
  A7318_RS15720 (A7318_15715) lpxK 3520494..3521504 (+) 1011 WP_034106778.1 tetraacyldisaccharide 4'-kinase -
  A7318_RS15725 (A7318_15720) - 3521529..3521714 (+) 186 WP_003174668.1 Trm112 family protein -
  A7318_RS15730 (A7318_15725) kdsB 3521711..3522475 (+) 765 WP_069077617.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  A7318_RS15735 (A7318_15730) - 3522475..3522939 (+) 465 WP_034106774.1 low molecular weight protein-tyrosine-phosphatase -
  A7318_RS15740 (A7318_15735) murB 3522936..3523955 (+) 1020 WP_034106772.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80404.46 Da        Isoelectric Point: 10.7274

>NTDB_id=181617 A7318_RS15705 WP_069077616.1 3517112..3519337(+) (comA) [Pseudomonas lurida strain L228]
MRTGTFALALGLLTLRFLPALPATGWLIALLVLALMLLPFRTYPLAFFLLGLSWACISAQWALDDRLRPALDGQTRWVEG
RVTGLPQQTGEGVRFVLTDNRSRNARLPKRIRVSWRGGPPVRSGERWRLAITLKQPAGLLNFHGFDQEAWLLAQRIGATG
SVKDGERLAPAHNAWRDSVRQRLMAVDAQGREAGLIALVLGDGSGLAAADWQVLQDTGTVHLLVISGQHIGLLAGLIYGL
IAGLARYGCWPRTWPWLPWACGLAFSAALGYGLLAGFGVPVQRACVMVGLVLLWRLRFRHLGLWWPLLLALNAVLVLEPL
ASLQPGFWLSFAAVAVLILAFGGRLGPWSLWQAWTRPQWLIAIGLFPVLLVLGLPISLSAPFANLVAVPWISLVVLPLAL
LGTALLPLPFVGEGLLWLAGGALEGLFEGLAWLAAQVPAWIPAEVPMGYWLVSLFGAVLLLLPKGVPFRVLGWPMLMLAV
FAPRELVPHGQVDVVQLDVGQGQALILRTRHHALLYDAGPRSGTFDLGARVVLPSLRKLGVGALDLMLLSHADADHAGGA
TAIAKGLPIKRVVGGETEGLPALLGTQPCISGERWTWDGVTFELWQWPGAITGNPKSCVLQVQANGERLLLTGDIDRAAE
EAMLGSPLAVPTHWLQAPHHGSRSSSSWAFLERLAPQSVLISRGRGNAFGHPHPQVMARYQRLGSQVYDSAEHGAVRLQL
GAFAPPVVARSQRRFWRERLP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=181617 A7318_RS15705 WP_069077616.1 3517112..3519337(+) (comA) [Pseudomonas lurida strain L228]
ATGAGGACAGGGACGTTCGCGCTGGCATTGGGGTTGCTGACCCTGCGCTTTTTACCGGCATTGCCGGCTACCGGCTGGCT
GATCGCCTTATTGGTGCTGGCATTGATGCTGTTGCCGTTTCGCACTTACCCGTTGGCGTTTTTCCTGCTGGGGCTGAGTT
GGGCCTGCATCAGCGCGCAGTGGGCGTTGGATGATCGCCTGAGGCCGGCACTGGATGGCCAGACACGTTGGGTGGAAGGG
CGGGTCACCGGGCTGCCGCAACAGACGGGTGAGGGCGTGCGTTTTGTCCTGACCGACAACCGGTCGCGCAATGCCCGGTT
GCCCAAACGCATCCGGGTGTCCTGGCGAGGCGGGCCACCGGTCCGCAGTGGTGAGCGCTGGCGCCTGGCAATCACCCTCA
AGCAACCGGCCGGGCTGTTGAATTTTCACGGATTTGACCAGGAAGCCTGGCTGCTGGCCCAGCGCATCGGCGCCACCGGC
TCGGTGAAGGACGGCGAGCGCCTGGCACCGGCCCACAACGCCTGGCGCGACAGTGTGCGCCAGCGCCTGATGGCGGTGGA
TGCCCAGGGCCGGGAAGCCGGCCTGATTGCCCTGGTGCTGGGGGATGGCTCCGGGTTGGCCGCTGCCGATTGGCAGGTGT
TGCAGGACACGGGCACCGTGCATCTGCTGGTCATCTCCGGCCAACACATCGGTTTGTTGGCGGGCTTGATCTATGGGTTG
ATCGCCGGGCTGGCGCGCTACGGCTGCTGGCCCCGAACCTGGCCGTGGCTGCCATGGGCGTGTGGCCTGGCATTCAGCGC
CGCGCTGGGCTACGGCTTGCTGGCAGGGTTTGGCGTGCCGGTGCAGCGTGCCTGCGTGATGGTCGGCCTGGTGTTGTTGT
GGCGGTTGCGCTTCCGGCATCTGGGGCTCTGGTGGCCGCTGCTGCTGGCACTCAATGCGGTGCTGGTCCTGGAACCCTTG
GCCAGCCTGCAGCCGGGCTTCTGGCTGTCGTTTGCGGCGGTAGCGGTATTGATCCTGGCGTTCGGTGGACGACTGGGGCC
ATGGAGCCTGTGGCAGGCGTGGACCCGGCCGCAGTGGTTGATTGCCATTGGGTTGTTTCCGGTGTTGCTGGTGCTGGGGC
TGCCTATCAGCCTGAGCGCGCCGTTCGCTAACCTTGTGGCGGTGCCGTGGATCAGCCTGGTGGTGTTGCCACTGGCGTTG
CTGGGGACGGCGTTGCTGCCGTTGCCGTTTGTGGGGGAAGGATTGCTCTGGCTGGCGGGCGGTGCGCTGGAGGGTTTGTT
CGAGGGCTTGGCGTGGCTGGCCGCGCAGGTGCCGGCCTGGATCCCGGCCGAAGTGCCGATGGGCTATTGGTTGGTGAGCC
TGTTCGGTGCCGTGTTGCTCCTGCTGCCCAAGGGCGTGCCGTTTCGCGTGCTGGGCTGGCCGATGCTGATGCTGGCCGTG
TTTGCGCCACGCGAACTGGTTCCCCATGGCCAGGTAGACGTGGTGCAATTGGATGTAGGGCAGGGGCAGGCGTTGATCTT
GCGTACCCGTCACCATGCCTTGCTGTATGACGCCGGCCCGCGCTCCGGAACCTTTGACCTGGGCGCGCGCGTGGTGCTGC
CGTCGCTGCGAAAACTTGGGGTAGGGGCCTTGGACCTGATGCTGCTCAGCCATGCCGACGCCGATCATGCCGGCGGCGCG
ACGGCGATAGCCAAGGGCCTGCCGATCAAACGCGTGGTGGGCGGGGAAACCGAGGGTCTGCCGGCGCTGCTCGGCACCCA
GCCGTGTATCAGTGGCGAGCGCTGGACCTGGGACGGTGTCACGTTCGAACTCTGGCAATGGCCTGGTGCTATCACCGGTA
ACCCGAAGTCCTGCGTGTTGCAGGTGCAGGCCAATGGCGAGCGCCTGTTGCTGACCGGTGACATTGACCGCGCCGCCGAA
GAGGCCATGCTCGGTTCACCGCTGGCGGTGCCCACTCATTGGTTGCAGGCGCCACACCATGGCAGTCGCAGTTCTTCATC
CTGGGCGTTCCTGGAGCGCCTTGCCCCGCAGTCCGTGCTTATTTCACGGGGGCGGGGCAATGCGTTCGGCCATCCCCATC
CGCAGGTGATGGCGCGTTACCAGCGGTTGGGCAGCCAGGTGTATGACAGTGCCGAGCACGGGGCCGTGCGCCTGCAACTC
GGGGCTTTCGCGCCGCCAGTTGTTGCGCGCAGTCAACGCAGGTTCTGGCGCGAGCGGTTACCGTAG

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-671)

Competence protein (Competence)

(198-462)

Domain of unknown function (DUF4131) (DUF4131)

(20-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.694

97.166

0.59
  comA Ralstonia pseudosolanacearum GMI1000

35.206

100

0.381

Multiple sequence alignment