Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   A7318_RS15710 Genome accession   NZ_CP015639
Coordinates   3519434..3520069 (+) Length   211 a.a.
NCBI ID   WP_012724911.1    Uniprot ID   A0A855QI08
Organism   Pseudomonas lurida strain L228     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3514434..3525069
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7318_RS15695 (A7318_15690) - 3515094..3516464 (+) 1371 WP_069077615.1 sensor histidine kinase -
  A7318_RS15700 (A7318_15695) - 3516461..3516976 (-) 516 WP_034106781.1 DUF2062 domain-containing protein -
  A7318_RS15705 (A7318_15700) comA 3517112..3519337 (+) 2226 WP_069077616.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  A7318_RS15710 (A7318_15705) exbB 3519434..3520069 (+) 636 WP_012724911.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  A7318_RS15715 (A7318_15710) - 3520066..3520494 (+) 429 WP_034106779.1 ExbD/TolR family protein -
  A7318_RS15720 (A7318_15715) lpxK 3520494..3521504 (+) 1011 WP_034106778.1 tetraacyldisaccharide 4'-kinase -
  A7318_RS15725 (A7318_15720) - 3521529..3521714 (+) 186 WP_003174668.1 Trm112 family protein -
  A7318_RS15730 (A7318_15725) kdsB 3521711..3522475 (+) 765 WP_069077617.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  A7318_RS15735 (A7318_15730) - 3522475..3522939 (+) 465 WP_034106774.1 low molecular weight protein-tyrosine-phosphatase -
  A7318_RS15740 (A7318_15735) murB 3522936..3523955 (+) 1020 WP_034106772.1 UDP-N-acetylmuramate dehydrogenase -
  A7318_RS15745 (A7318_15740) - 3524037..3524708 (-) 672 WP_003174664.1 Bax inhibitor-1/YccA family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22875.02 Da        Isoelectric Point: 7.3613

>NTDB_id=181618 A7318_RS15710 WP_012724911.1 3519434..3520069(+) (exbB) [Pseudomonas lurida strain L228]
MWELVKSGGWMMLPIIMSSIAALGIVAERLWTLRASRVTPEHLLGQVWSWIKNKQLDKDKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=181618 A7318_RS15710 WP_012724911.1 3519434..3520069(+) (exbB) [Pseudomonas lurida strain L228]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATCATGAGCTCTATCGCCGCACTCGGCATCGTCGC
CGAACGCCTGTGGACCCTGCGCGCCAGTCGCGTCACCCCCGAGCATCTGCTGGGGCAGGTCTGGAGCTGGATCAAGAACA
AGCAACTGGACAAGGACAAACTCAAGGAGCTGCGCGCCAACTCCCCGCTGGGTGAAATCCTTGCTGCGGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAGTGCATCGAAGAAGCCGCCGCCCGCGTCATCCATGAACTGGAGCGCTACAT
CAACGCCCTCGGCACCATCGCCGCCATGGCGCCATTGCTCGGCTTGCTGGGCACGGTGCTGGGCATGATCGATATTTTCA
GCTCGTTCATGGGCTCGGGCATGACCACCAACGCGGCGGTGTTGGCCGGGGGGATCTCCAAGGCGCTGATCACCACGGCG
GCGGGCCTGATGGTGGGTATTCCTTCGGTGTTCTTCCACCGTTTCCTGCAGCGTCGCATTGATGAACTGGTGGTGGGCAT
GGAACAGGAAGCCATCAAGCTGGTGGAAGTGGTACAGGGCGACCGTGACGTGGACCTGGTTGGGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A855QI08

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.834

100

0.848

Multiple sequence alignment