Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   A7317_RS17860 Genome accession   NZ_CP015637
Coordinates   4055545..4057770 (-) Length   741 a.a.
NCBI ID   WP_237141772.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain L321     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4050545..4062770
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7317_RS17825 (A7317_17810) murB 4050914..4051933 (-) 1020 WP_069076495.1 UDP-N-acetylmuramate dehydrogenase -
  A7317_RS17830 (A7317_17815) - 4051930..4052394 (-) 465 WP_024076128.1 low molecular weight protein-tyrosine-phosphatase -
  A7317_RS17835 (A7317_17820) kdsB 4052394..4053158 (-) 765 WP_024076129.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  A7317_RS17840 (A7317_17825) - 4053155..4053340 (-) 186 WP_003174668.1 Trm112 family protein -
  A7317_RS17845 (A7317_17830) lpxK 4053365..4054375 (-) 1011 WP_069076496.1 tetraacyldisaccharide 4'-kinase -
  A7317_RS17850 (A7317_17835) - 4054375..4054803 (-) 429 WP_024076131.1 ExbD/TolR family protein -
  A7317_RS17855 (A7317_17840) exbB 4054800..4055435 (-) 636 WP_024076132.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  A7317_RS17860 (A7317_17845) comA 4055545..4057770 (-) 2226 WP_237141772.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  A7317_RS17865 (A7317_17850) - 4057906..4058421 (+) 516 WP_024076134.1 DUF2062 domain-containing protein -
  A7317_RS17870 (A7317_17855) - 4058418..4059794 (-) 1377 WP_069076498.1 sensor histidine kinase -
  A7317_RS17875 (A7317_17860) - 4059781..4060509 (-) 729 WP_069076499.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80296.31 Da        Isoelectric Point: 10.7004

>NTDB_id=181572 A7317_RS17860 WP_237141772.1 4055545..4057770(-) (comA) [Pseudomonas fluorescens strain L321]
MKTGMFALALGLLALRFLPALPPAAGVLAMCVLALMLLPFRSHPLAFFLLGLSWACISAQWALDDRLQPALDGQTRWVEG
RVTGLPQQTSTGVRFELTDGRSPKARLPKRIRVAWHGGPPVRSGERWRLAVTLKRPSGVLNFHGFDHEAWLLAQRIGATG
SVKDGERLAPTRNAWRDAVRQRLMAVDAQGREAGLAALVLGDGSGLAAEDWRVLQDTGTVHLLVISGQHIGLLAGLIYGL
VTLLARYGCWPPAWPWLPWACGLAFAAALGYGLLAGFGVPVQRACVMVGLVLLWRLRFRHLGAWWPLLLAFNGVLILEPL
ASLQPGFWLSFAAVAVLVLAFGGRLGRWSAWQAWTRPQWLIAIGLFPLLLVLGLPISLSAPLANLFAVPWISLVVLPLAL
LGTVLVAVPFVGEGLLWLAGGALDGLFRALALLAGHLPAWIPAEVPMGYWLVSVAGAVLLLLPRGVPLRPMGWPMLLLAV
FPPREPVPHGQVEVVQLDVGQGQALVLRTRHHTLLYDAGPRSGEVDLGARVVLPSLRKLGVEVLDMMLLSHADADHAGGA
AAIARGLPIRRVVGGETRGLPAFLGTEPCVSGEQWEWDGVSFELWQWPDAISGNPKSCVLQVQAKGERMLLTGDIDRAAE
RAFLASPLAVRTDWLQAPHHGSRSSSSWPFVQRLAPTAVLISRGRGNAFGHPHPQVMERYRALGTQVYDSAEQGAVRVQL
GAFLPPTVARSQRRFWREALP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=181572 A7317_RS17860 WP_237141772.1 4055545..4057770(-) (comA) [Pseudomonas fluorescens strain L321]
ATGAAGACAGGGATGTTCGCGCTCGCGCTGGGGCTGCTCGCCTTGCGTTTTTTACCCGCGTTGCCGCCTGCCGCGGGGGT
GTTGGCCATGTGCGTGCTGGCGTTGATGCTGCTGCCGTTTCGCAGCCACCCACTGGCGTTCTTTCTGCTGGGCTTGAGTT
GGGCGTGCATCAGCGCGCAGTGGGCGCTGGATGACCGCCTGCAACCGGCGCTCGATGGCCAGACGCGCTGGGTGGAGGGC
CGTGTGACCGGGTTGCCGCAGCAGACCAGCACGGGCGTGCGTTTCGAACTGACCGACGGCCGGTCCCCCAAGGCGCGTTT
ACCCAAGCGTATTCGCGTGGCCTGGCATGGCGGGCCACCGGTGCGCAGTGGGGAGCGCTGGCGCTTGGCCGTGACGCTCA
AGCGGCCATCCGGCGTGCTCAACTTCCATGGCTTTGATCATGAGGCCTGGCTGTTGGCCCAGCGCATCGGTGCCACCGGC
TCGGTGAAAGACGGTGAGCGTTTGGCGCCGACGCGCAACGCTTGGCGCGACGCGGTCCGCCAACGACTGATGGCGGTGGA
TGCCCAAGGCCGCGAGGCCGGGCTGGCCGCCTTGGTGCTGGGCGATGGCTCGGGGCTGGCCGCCGAGGATTGGCGTGTGT
TGCAGGACACCGGTACGGTGCACCTGCTGGTGATATCCGGCCAGCATATTGGCTTGCTGGCGGGGTTGATCTATGGGCTG
GTCACACTGCTGGCGCGCTACGGTTGCTGGCCCCCCGCCTGGCCGTGGCTGCCTTGGGCGTGTGGCCTGGCATTTGCTGC
CGCGCTGGGCTACGGCCTGCTGGCGGGGTTCGGAGTGCCGGTGCAAAGGGCCTGCGTGATGGTGGGGCTGGTATTGCTGT
GGCGTTTGCGTTTTCGCCATTTGGGCGCCTGGTGGCCATTGTTACTGGCATTTAATGGCGTGCTGATCCTTGAGCCTTTG
GCCAGCCTGCAGCCGGGGTTCTGGTTGTCGTTCGCGGCTGTCGCGGTATTGGTGCTGGCATTCGGTGGGCGTTTGGGGCG
GTGGAGCGCCTGGCAAGCCTGGACCCGTCCCCAGTGGTTGATCGCGATCGGCCTGTTTCCGCTGTTGCTGGTGCTGGGGC
TGCCCATCAGTCTCAGCGCGCCGTTGGCTAACCTGTTTGCCGTGCCATGGATCAGCCTGGTGGTGTTGCCCTTGGCATTG
TTGGGCACTGTGCTGGTGGCGGTGCCCTTTGTGGGGGAGGGGCTGTTATGGCTGGCGGGTGGGGCGCTGGATGGGTTGTT
CCGCGCCTTGGCGTTGCTGGCCGGGCACCTGCCGGCATGGATACCGGCCGAGGTGCCGATGGGCTATTGGCTGGTGAGCG
TCGCGGGTGCAGTGTTACTGCTGTTGCCCAGGGGCGTACCGTTACGACCGATGGGGTGGCCGATGCTGTTGTTGGCGGTG
TTTCCGCCGCGGGAGCCGGTGCCCCATGGGCAGGTTGAGGTGGTGCAACTGGATGTCGGTCAGGGGCAGGCGCTGGTGCT
GCGCACCCGTCATCACACCTTGCTCTACGATGCGGGCCCGCGCTCGGGGGAAGTCGATCTTGGCGCGCGTGTGGTATTGC
CGTCATTGAGAAAACTCGGGGTGGAGGTATTGGACATGATGCTGCTCAGCCACGCCGACGCCGACCATGCCGGCGGTGCG
GCGGCTATTGCCCGTGGGCTGCCGATCAGACGGGTAGTCGGAGGCGAAACACGAGGCTTGCCGGCGTTTCTCGGCACTGA
ACCCTGTGTCAGCGGTGAACAGTGGGAGTGGGATGGGGTGTCATTTGAACTGTGGCAGTGGCCAGATGCTATTAGTGGTA
ACCCGAAATCCTGTGTATTACAGGTCCAGGCCAAGGGTGAGCGCATGTTGCTCACGGGGGATATTGATCGCGCCGCCGAG
CGGGCTTTTCTTGCCTCGCCCTTGGCTGTGCGGACCGATTGGTTGCAGGCGCCCCATCATGGCAGCCGCAGTTCTTCGTC
CTGGCCCTTTGTGCAGCGGCTGGCGCCCACGGCGGTGCTGATTTCCAGGGGGCGAGGCAACGCGTTCGGCCACCCCCACC
CCCAGGTGATGGAACGCTACCGGGCACTGGGTACCCAGGTTTATGACAGTGCTGAACAAGGGGCTGTGCGTGTGCAATTG
GGGGCGTTCCTGCCACCGACTGTTGCGCGCAGTCAACGCCGTTTCTGGCGCGAAGCGTTACCGTAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-651)

Competence protein (Competence)

(198-464)

Domain of unknown function (DUF4131) (DUF4131)

(20-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.944

97.031

0.582
  comA Ralstonia pseudosolanacearum GMI1000

35.714

100

0.378

Multiple sequence alignment