Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   A7317_RS17855 Genome accession   NZ_CP015637
Coordinates   4054800..4055435 (-) Length   211 a.a.
NCBI ID   WP_024076132.1    Uniprot ID   A0AB36XW30
Organism   Pseudomonas fluorescens strain L321     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4049800..4060435
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7317_RS17820 (A7317_17805) - 4050168..4050839 (+) 672 WP_010209655.1 Bax inhibitor-1/YccA family protein -
  A7317_RS17825 (A7317_17810) murB 4050914..4051933 (-) 1020 WP_069076495.1 UDP-N-acetylmuramate dehydrogenase -
  A7317_RS17830 (A7317_17815) - 4051930..4052394 (-) 465 WP_024076128.1 low molecular weight protein-tyrosine-phosphatase -
  A7317_RS17835 (A7317_17820) kdsB 4052394..4053158 (-) 765 WP_024076129.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  A7317_RS17840 (A7317_17825) - 4053155..4053340 (-) 186 WP_003174668.1 Trm112 family protein -
  A7317_RS17845 (A7317_17830) lpxK 4053365..4054375 (-) 1011 WP_069076496.1 tetraacyldisaccharide 4'-kinase -
  A7317_RS17850 (A7317_17835) - 4054375..4054803 (-) 429 WP_024076131.1 ExbD/TolR family protein -
  A7317_RS17855 (A7317_17840) exbB 4054800..4055435 (-) 636 WP_024076132.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  A7317_RS17860 (A7317_17845) comA 4055545..4057770 (-) 2226 WP_237141772.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  A7317_RS17865 (A7317_17850) - 4057906..4058421 (+) 516 WP_024076134.1 DUF2062 domain-containing protein -
  A7317_RS17870 (A7317_17855) - 4058418..4059794 (-) 1377 WP_069076498.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22907.05 Da        Isoelectric Point: 7.4245

>NTDB_id=181571 A7317_RS17855 WP_024076132.1 4054800..4055435(-) (exbB) [Pseudomonas fluorescens strain L321]
MWELVKSGGWMMLPIIMSSIAALGIVAERLWTLRASRVTPEHLLGQVWGWIKNKQLDKQKLKELRAHSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFTGSGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=181571 A7317_RS17855 WP_024076132.1 4054800..4055435(-) (exbB) [Pseudomonas fluorescens strain L321]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATCATGAGTTCCATCGCCGCACTCGGCATCGTTGC
CGAACGCCTGTGGACCCTGCGCGCCAGTCGCGTCACCCCGGAGCATCTGCTGGGGCAGGTCTGGGGCTGGATCAAGAACA
AGCAACTGGACAAGCAAAAGCTCAAGGAGCTGCGCGCCCATTCACCGCTGGGTGAAATTCTCGCCGCCGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAGTGCATTGAAGAAGCGGCTGCCCGCGTCATCCATGAGCTGGAGCGCTACAT
CAACGCCCTGGGTACCATCGCGGCCATGGCGCCGTTGCTCGGCCTGCTGGGCACGGTGTTGGGCATGATCGATATTTTCA
GCGCCTTCACGGGCTCCGGCATGACCACCAACGCTGCCGTGCTGGCCGGCGGTATTTCCAAGGCATTGATCACCACGGCC
GCGGGCCTGATGGTCGGTATTCCCTCGGTGTTCTTCCATCGCTTCCTGCAGCGCCGCATCGATGAACTGGTGGTGGGCAT
GGAGCAGGAAGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGACCGTGATGTGGACCTGGTCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.782

100

0.858

Multiple sequence alignment