Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   AsACE_RS13440 Genome accession   NZ_CP015615
Coordinates   2773636..2775054 (+) Length   472 a.a.
NCBI ID   WP_004810143.1    Uniprot ID   N9N911
Organism   Acinetobacter schindleri strain ACE     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2768636..2780054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AsACE_RS13420 (AsACE_CH02672) thrC 2768879..2770018 (+) 1140 WP_004810136.1 threonine synthase -
  AsACE_RS13425 (AsACE_CH02673) - 2770083..2771138 (-) 1056 WP_026056747.1 serine hydrolase -
  AsACE_RS13430 (AsACE_CH02674) - 2771362..2771997 (+) 636 WP_004810139.1 response regulator -
  AsACE_RS13435 (AsACE_CH02675) pilS 2772047..2773612 (+) 1566 WP_076754575.1 nitrogen regulation protein NR(II) Regulator
  AsACE_RS13440 (AsACE_CH02676) pilR 2773636..2775054 (+) 1419 WP_004810143.1 sigma-54-dependent transcriptional regulator Regulator
  AsACE_RS13445 (AsACE_CH02677) - 2775081..2776253 (-) 1173 WP_004810144.1 S41 family peptidase -
  AsACE_RS13450 (AsACE_CH02678) gpmI 2776274..2777824 (-) 1551 WP_034424062.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  AsACE_RS13455 (AsACE_CH02679) lptG 2777949..2779019 (-) 1071 WP_004810149.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 472 a.a.        Molecular weight: 53538.51 Da        Isoelectric Point: 6.0929

>NTDB_id=181543 AsACE_RS13440 WP_004810143.1 2773636..2775054(+) (pilR) [Acinetobacter schindleri strain ACE]
MEQQPLVLLVDDEEDLCTLMQMSLMRMGIRTHIAHRLEDAKKRLADHQYDACLTDLNLPDGNGLQLLEFISEHHPSLPVA
VLTAYGNMDIAIAALKAGAFDFVSKPINQKHLEQLLQKALNKPVDYQSNQQDTLEYKMLIGQSKPIQQLRTTLHKIARSQ
APVFITGESGTGKEVVANLVHRLSNRSEGPFIAINCGAIPAELMESELFGHKKGSFTGAMQDKQGLIQSAHGGSLFLDEI
AELPLSMQVKLLRAVQEKRIRPLGSDIEIDVDFRVISASHQDLEAQVQQGKFRQDLFFRIHVMDLVLPPLRERGNDILLL
AEHFIQKICQEWQIPVKRLTEHSKEQLLTQYYPGNVRELRNIIERAITLSDEDTIDIQHLQTAPLRQSFVTSEITSNIAS
ESSNTTDTFIVPKKLPEEGLELYMEKIEKEILLNALNLTHWNRTLAAKKLGMSFRSLRYRLKKFGLDTDEEE

Nucleotide


Download         Length: 1419 bp        

>NTDB_id=181543 AsACE_RS13440 WP_004810143.1 2773636..2775054(+) (pilR) [Acinetobacter schindleri strain ACE]
GTGGAACAACAACCACTGGTACTATTGGTCGATGATGAAGAAGATCTCTGTACGCTCATGCAAATGTCGCTCATGCGTAT
GGGAATTCGCACGCATATCGCCCATCGTCTGGAGGATGCTAAAAAACGCCTGGCAGATCATCAGTATGATGCCTGCCTTA
CGGACTTGAATCTGCCTGATGGTAATGGCTTGCAGTTACTGGAATTTATCAGTGAGCATCATCCTTCCCTACCGGTTGCT
GTGTTAACTGCCTATGGCAATATGGATATTGCCATTGCTGCACTCAAGGCAGGTGCCTTTGACTTTGTCAGTAAGCCGAT
CAATCAGAAACATCTGGAGCAGTTACTGCAAAAGGCACTAAATAAGCCAGTAGATTACCAATCCAATCAGCAAGATACCC
TAGAATATAAAATGCTGATTGGCCAGTCCAAGCCGATTCAGCAATTACGTACGACTTTGCATAAAATTGCCCGCTCTCAA
GCCCCGGTATTTATTACCGGTGAATCTGGTACAGGTAAAGAAGTTGTAGCAAATCTGGTTCATCGCCTCAGTAACCGGAG
TGAAGGACCCTTTATTGCCATTAACTGTGGCGCAATTCCAGCTGAACTGATGGAAAGTGAGCTATTCGGGCACAAGAAAG
GCAGCTTTACTGGCGCCATGCAGGACAAACAGGGCCTAATCCAGTCTGCACATGGCGGCAGTTTATTTCTGGATGAAATT
GCAGAACTTCCACTCAGTATGCAGGTCAAACTGCTACGTGCAGTACAGGAAAAACGGATTCGCCCTTTAGGCTCAGATAT
CGAAATTGATGTGGATTTTCGCGTCATCAGCGCCAGTCATCAGGACCTGGAAGCACAGGTACAGCAAGGTAAATTTCGTC
AGGATTTATTCTTCCGCATTCATGTGATGGATCTAGTGTTGCCACCATTACGTGAGCGTGGTAATGACATTCTGCTGCTG
GCTGAACACTTTATTCAGAAGATCTGTCAGGAATGGCAAATCCCTGTGAAACGCCTGACTGAACATAGCAAAGAGCAGTT
ACTGACTCAATACTATCCAGGAAATGTCCGGGAATTGCGTAATATCATCGAGCGAGCTATTACCCTCAGCGATGAAGACA
CAATTGATATCCAGCATTTGCAAACTGCACCTTTACGCCAGAGTTTTGTGACCTCCGAAATCACATCGAATATAGCATCC
GAATCGAGTAACACTACTGACACTTTTATCGTACCGAAAAAACTGCCTGAAGAAGGTCTTGAACTGTATATGGAGAAAAT
CGAGAAAGAAATTTTGCTAAATGCATTGAATCTGACTCACTGGAACCGTACGCTTGCCGCAAAAAAGTTGGGCATGTCTT
TCCGCTCGCTGCGTTATCGTCTGAAGAAATTTGGGCTCGATACCGATGAAGAAGAATGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(139-305)

Response regulator receiver domain (Response_reg)

(7-116)

Bacterial regulatory protein, Fis family (HTH_8)

(424-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9N911

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

74.895

100

0.752
  pilR Pseudomonas aeruginosa PAK

48.188

99.364

0.479

Multiple sequence alignment