Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   AsACE_RS13435 Genome accession   NZ_CP015615
Coordinates   2772047..2773612 (+) Length   521 a.a.
NCBI ID   WP_076754575.1    Uniprot ID   -
Organism   Acinetobacter schindleri strain ACE     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2767047..2778612
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AsACE_RS13415 (AsACE_CH02671) - 2767518..2768822 (+) 1305 WP_076754572.1 homoserine dehydrogenase -
  AsACE_RS13420 (AsACE_CH02672) thrC 2768879..2770018 (+) 1140 WP_004810136.1 threonine synthase -
  AsACE_RS13425 (AsACE_CH02673) - 2770083..2771138 (-) 1056 WP_026056747.1 serine hydrolase -
  AsACE_RS13430 (AsACE_CH02674) - 2771362..2771997 (+) 636 WP_004810139.1 response regulator -
  AsACE_RS13435 (AsACE_CH02675) pilS 2772047..2773612 (+) 1566 WP_076754575.1 nitrogen regulation protein NR(II) Regulator
  AsACE_RS13440 (AsACE_CH02676) pilR 2773636..2775054 (+) 1419 WP_004810143.1 sigma-54-dependent transcriptional regulator Regulator
  AsACE_RS13445 (AsACE_CH02677) - 2775081..2776253 (-) 1173 WP_004810144.1 S41 family peptidase -
  AsACE_RS13450 (AsACE_CH02678) gpmI 2776274..2777824 (-) 1551 WP_034424062.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 521 a.a.        Molecular weight: 59374.73 Da        Isoelectric Point: 6.3959

>NTDB_id=181542 AsACE_RS13435 WP_076754575.1 2772047..2773612(+) (pilS) [Acinetobacter schindleri strain ACE]
MSQRSSYSELNQYLLGTWYAAYRLIISTGLLLIFVLTYPEHTSDLEYPKLYHYVLSSFIAIALIQLFVLKYFKKFVQQQL
TGIFIVDVCALSLLTLATNGTNLQLSMLFVITIFAASILLNAQKALVITLIAVISVIYQHFITSLFTLSSLGNIGNSAIL
AFMFFVVYGIGQIAVRRFQILENVNFSQSMELYRLQNINRYILEQIETGYLVLDENCHVVLSNPAACHLLGIQQMYAHDT
FPLYQSQPDLFELIRFEDLENGERFQFESQQSRFNIHVQVQKLIVPHQTLMLLVLQDARKLNQQVQQLKLAALGQLSASI
AHEIRNPLAAIVQANDLLPGCEQDQQQVLHSMISKQATRINRIIEDTLNMVKNKETHPVSIQLNEFIPQCIHEDLADIAD
QIKLNIDMRLDIQFDEAQLRQVLVNLLRNAVRHNDPAVGYVELKVHPYEHKVWIDVRDFGQGVAPADQSLLFKPFFSTSI
NGTGLGLYLSHSFCEANQAQLNYIQQEQGACFRISCQRITV

Nucleotide


Download         Length: 1566 bp        

>NTDB_id=181542 AsACE_RS13435 WP_076754575.1 2772047..2773612(+) (pilS) [Acinetobacter schindleri strain ACE]
ATGTCGCAGCGATCTTCTTATTCAGAGCTTAACCAATATCTGCTGGGCACTTGGTATGCGGCATACCGCCTGATCATCAG
TACTGGTTTACTGCTGATTTTCGTGCTCACTTATCCTGAGCACACTAGCGATTTAGAATATCCCAAGCTGTATCATTATG
TACTGAGTAGCTTCATTGCTATCGCCTTGATCCAGCTTTTTGTTCTGAAGTATTTTAAGAAATTTGTTCAGCAACAGCTG
ACCGGTATTTTTATTGTCGATGTCTGTGCACTCAGCCTGCTGACCTTGGCCACGAATGGCACCAATCTACAGCTCAGTAT
GCTATTCGTGATTACTATCTTTGCCGCTTCCATTTTACTGAATGCACAAAAAGCGCTGGTGATTACCTTGATTGCGGTCA
TCAGTGTGATTTACCAGCATTTCATCACCAGCCTGTTTACCCTTTCCTCTCTGGGTAATATCGGCAATAGCGCCATATTG
GCTTTCATGTTTTTTGTGGTCTATGGCATCGGGCAAATTGCAGTCCGACGTTTCCAGATCTTGGAAAATGTCAATTTTTC
CCAGTCCATGGAACTTTATCGTCTACAAAATATTAACCGTTATATTCTGGAACAGATTGAGACTGGTTATCTGGTTCTCG
ATGAAAACTGTCATGTGGTGCTGAGTAATCCTGCTGCCTGCCACTTGCTTGGCATCCAGCAAATGTATGCACATGACACG
TTTCCATTGTACCAGTCACAACCAGATCTGTTTGAGCTGATCCGCTTTGAAGATCTGGAAAATGGCGAACGCTTTCAGTT
TGAATCCCAGCAAAGCCGTTTCAATATTCATGTTCAGGTACAAAAACTGATTGTACCGCATCAAACTTTAATGTTGCTGG
TGCTGCAAGATGCGCGAAAACTTAATCAACAAGTCCAGCAATTAAAACTGGCGGCACTCGGGCAACTTTCTGCCAGTATT
GCCCATGAGATTCGTAATCCGCTTGCAGCGATTGTTCAAGCCAATGATCTGTTACCTGGCTGTGAACAGGACCAGCAGCA
GGTGTTGCATAGCATGATCAGCAAGCAGGCAACACGAATCAACCGGATTATCGAAGACACGCTGAATATGGTGAAGAATA
AAGAGACTCATCCAGTATCTATTCAGCTGAATGAATTTATTCCACAATGTATCCATGAGGATTTGGCTGATATTGCTGAT
CAGATTAAGCTGAATATTGATATGCGACTGGATATCCAGTTTGATGAAGCCCAGCTACGTCAAGTATTGGTCAATTTATT
GCGTAATGCCGTGCGGCATAACGATCCAGCCGTAGGCTATGTAGAATTAAAAGTTCATCCTTATGAACATAAAGTCTGGA
TTGATGTACGGGATTTTGGTCAGGGTGTTGCGCCTGCCGATCAGAGTCTGCTGTTTAAACCATTTTTCAGCACTTCAATT
AATGGTACAGGACTAGGGCTATATTTATCCCACAGTTTCTGTGAGGCCAATCAGGCCCAGCTGAATTATATACAACAAGA
ACAGGGTGCCTGCTTCCGGATTAGCTGCCAGCGCATCACTGTTTAA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(312-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(415-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

57.228

96.929

0.555

Multiple sequence alignment