Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   AsACE_RS05285 Genome accession   NZ_CP015615
Coordinates   1117267..1117971 (+) Length   234 a.a.
NCBI ID   WP_004894131.1    Uniprot ID   -
Organism   Acinetobacter schindleri strain ACE     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1112267..1122971
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AsACE_RS05270 (AsACE_CH01043) - 1113032..1115269 (+) 2238 WP_076753342.1 NADP-dependent isocitrate dehydrogenase -
  AsACE_RS05275 (AsACE_CH01044) - 1115577..1116617 (+) 1041 WP_076753343.1 metallophosphoesterase -
  AsACE_RS05280 (AsACE_CH01045) - 1116697..1117119 (-) 423 WP_076753344.1 OsmC family protein -
  AsACE_RS05285 (AsACE_CH01046) crp 1117267..1117971 (+) 705 WP_004894131.1 cAMP-activated global transcriptional regulator CRP Regulator
  AsACE_RS05290 (AsACE_CH01047) - 1118153..1119202 (+) 1050 WP_076753345.1 NADP(H)-dependent aldo-keto reductase -
  AsACE_RS05295 (AsACE_CH01048) clpB 1119453..1122032 (+) 2580 WP_004812293.1 ATP-dependent chaperone ClpB -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26296.92 Da        Isoelectric Point: 4.6679

>NTDB_id=181518 AsACE_RS05285 WP_004894131.1 1117267..1117971(+) (crp) [Acinetobacter schindleri strain ACE]
MTSNFSQLSTDALSPGQLPESVKALLKRAYINRYPKRTTIVDAGTESKSLYLILKGSVSIILREDDEREIVVAYLNAGDF
FGEMGLFEANPQRTAEVRTRDVCEIAEISYENFHELSKQYPDLSYAVFAQLVRRLKNTTRKVTDLAFIDVSGRIARCLID
LSAQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEEQGMIETDGKAILIFDASLEQNEVPAEDDSEE

Nucleotide


Download         Length: 705 bp        

>NTDB_id=181518 AsACE_RS05285 WP_004894131.1 1117267..1117971(+) (crp) [Acinetobacter schindleri strain ACE]
ATGACTTCAAACTTTTCACAATTAAGCACAGATGCACTTTCTCCGGGACAATTGCCAGAATCCGTGAAGGCATTATTAAA
ACGTGCATATATCAACCGTTACCCAAAACGTACAACGATCGTTGATGCAGGAACAGAATCTAAATCTTTATATTTGATTC
TGAAGGGGTCTGTATCGATCATTCTTCGTGAAGATGATGAGCGTGAAATTGTCGTGGCATATTTGAACGCGGGTGACTTT
TTTGGGGAAATGGGCTTATTCGAAGCAAATCCACAACGTACTGCAGAAGTGCGTACGCGTGACGTTTGTGAAATTGCAGA
GATTAGCTACGAAAACTTCCATGAACTGAGCAAACAATATCCTGACTTGAGTTATGCGGTCTTTGCCCAACTGGTTCGCC
GTCTGAAGAATACGACACGTAAAGTAACTGACCTGGCATTTATTGATGTTTCTGGTCGTATCGCACGTTGTCTGATTGAT
CTTTCAGCTCAGCCTGAAGCGATGATCTTACCAAATGGCCGTCAGATCCGTATTACCCGTCAGGAAATTGGCCGTATTGT
AGGTTGTTCTCGTGAAATGGTCGGTCGCGTACTGAAAACCCTTGAAGAGCAAGGCATGATCGAAACAGATGGTAAAGCAA
TTCTGATCTTTGATGCCTCACTGGAACAAAATGAAGTACCAGCTGAAGATGATTCAGAAGAATAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)

Bacterial regulatory proteins, crp family (Crp)

(176-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

93.162

100

0.932
  crp Vibrio cholerae strain A1552

47.805

87.607

0.419
  crp Haemophilus influenzae Rd KW20

48.718

83.333

0.406

Multiple sequence alignment