Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   BZK08_RS06075 Genome accession   NZ_CP019594
Coordinates   1193940..1196000 (+) Length   686 a.a.
NCBI ID   WP_084568188.1    Uniprot ID   -
Organism   Staphylococcus aureus strain GD1539     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1188940..1201000
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BZK08_RS06050 (BZK08_06100) rpe 1189411..1190055 (+) 645 WP_000164332.1 ribulose-phosphate 3-epimerase -
  BZK08_RS06055 (BZK08_06105) - 1190062..1190703 (+) 642 WP_000547904.1 thiamine diphosphokinase -
  BZK08_RS06060 (BZK08_06110) rpmB 1191084..1191272 (-) 189 WP_000517908.1 50S ribosomal protein L28 -
  BZK08_RS06065 (BZK08_06115) - 1191715..1192089 (+) 375 WP_000171418.1 Asp23/Gls24 family envelope stress response protein -
  BZK08_RS06070 (BZK08_06120) fakA 1192104..1193750 (+) 1647 WP_000623896.1 fatty acid kinase catalytic subunit FakA -
  BZK08_RS06075 (BZK08_06125) recG 1193940..1196000 (+) 2061 WP_084568188.1 ATP-dependent DNA helicase RecG Machinery gene
  BZK08_RS06080 (BZK08_06130) fapR 1196203..1196775 (+) 573 WP_001548538.1 transcription factor FapR -
  BZK08_RS06085 (BZK08_06135) plsX 1196780..1197766 (+) 987 WP_000239748.1 phosphate acyltransferase PlsX -
  BZK08_RS06090 (BZK08_06140) fabD 1197759..1198685 (+) 927 WP_000047357.1 ACP S-malonyltransferase -
  BZK08_RS06095 (BZK08_06145) fabG 1198678..1199412 (+) 735 WP_000167269.1 3-oxoacyl-[acyl-carrier-protein] reductase -
  BZK08_RS06105 (BZK08_06155) - 1199943..1200176 (+) 234 WP_000426914.1 acyl carrier protein -

Sequence

Protein


Download         Length: 686 a.a.        Molecular weight: 78119.67 Da        Isoelectric Point: 6.3377

>NTDB_id=181480 BZK08_RS06075 WP_084568188.1 1193940..1196000(+) (recG) [Staphylococcus aureus strain GD1539]
MAKVNLIESPYSLLQLKGIGPKKIEVLQQLNIHTVEDLVLYLPTRYEDNTVIDLNQAEDQSNVTIEGQVYTAPVVAFFGR
NKSKLTVHLMVNNIAVKCIFFNQPYLKKKIELNQTITVKGKWNRVKQEITGNRVFFSSQGTQTQENADVQLEPVYRIKEG
IKQKQIRDQIRQALNDVTIHEWLTDGLREKYKLETLDFTLNTLHHPKSKEGLLRARRTYAFTELFLFELRMQWLNRIEKS
SDEAIEIDYDLDQVKSFIDRLPFELTEAQKSSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVAAICMYALKTAGYQSALMV
PTEILAEQHAESLIALFGDSMNVALLTGSVKGKKRKILLEQLENGTIDCLIGTHALIQDDVIFHNVGLVITDEQHRFGVN
QRQLLREKGAMTNVLFMTATPIPRTLAISVFGEMDVSSIKQLPKGRKPIITTWAKHEQYDKVLMQMTSELKKGRQAYVIC
PLIESSEHLEDVQNVVALYESLQQNYGVSRVGLLHGKLSADEKDEVMQKFSNHEIDVLVSTTVVEVGVNVPNATFMMIYD
ADRFGLSTLHQLRGRVGRSDQQSYCVLIASPKTETGIERMTIMTQTTDGFELSERDLEMRGPGDFFGVKQSGLPDFLVAN
LVEDYRMLEVARDEAAELIQSGVFFENTYQHLRHFVEENLLHRSFD

Nucleotide


Download         Length: 2061 bp        

>NTDB_id=181480 BZK08_RS06075 WP_084568188.1 1193940..1196000(+) (recG) [Staphylococcus aureus strain GD1539]
TTGGCGAAAGTAAACTTAATAGAAAGTCCATATTCTCTTTTACAATTAAAAGGTATAGGTCCTAAGAAAATAGAAGTATT
GCAACAACTAAATATTCATACAGTGGAAGATCTTGTTCTTTATTTGCCAACTAGATATGAAGATAATACAGTGATTGATT
TGAATCAAGCAGAAGATCAATCTAACGTTACGATAGAAGGACAAGTATATACAGCTCCAGTTGTTGCATTTTTTGGAAGA
AATAAATCAAAATTAACTGTTCATTTAATGGTAAATAATATTGCTGTCAAATGTATTTTTTTCAATCAACCGTATTTAAA
AAAGAAAATCGAATTAAATCAAACTATAACTGTTAAAGGTAAGTGGAATAGGGTTAAACAGGAAATTACTGGTAATAGGG
TTTTCTTTAGTTCGCAAGGTACACAAACTCAAGAAAACGCAGATGTTCAATTAGAACCAGTCTATCGTATTAAGGAAGGT
ATTAAACAAAAGCAAATACGAGACCAAATTAGACAAGCGTTAAATGATGTGACAATTCATGAATGGTTAACTGATGGACT
AAGAGAAAAATATAAATTAGAGACCTTGGACTTTACTTTGAACACATTACATCATCCTAAAAGTAAAGAGGGTTTATTAC
GTGCTCGTAGAACCTATGCATTTACTGAACTGTTTTTATTCGAATTACGTATGCAATGGCTAAATAGAATAGAAAAGTCA
TCTGACGAAGCAATTGAAATTGATTATGACTTAGACCAAGTTAAATCATTTATTGATCGTTTACCTTTTGAACTAACTGA
AGCACAGAAATCCAGTGTTAATGAAATTTTTAGAGATTTAAAAGCACCAATACGTATGCATCGATTACTTCAAGGTGATG
TAGGTTCAGGAAAAACAGTTGTTGCTGCAATTTGTATGTATGCGTTAAAAACGGCTGGTTATCAATCAGCATTGATGGTA
CCAACTGAAATTTTAGCAGAGCAACATGCTGAAAGTTTAATTGCTTTATTTGGAGATTCTATGAACGTTGCGTTGTTAAC
TGGGTCAGTAAAAGGTAAGAAACGAAAAATACTTTTAGAACAACTTGAAAATGGTACGATTGATTGTTTAATTGGAACCC
ATGCATTGATTCAAGATGATGTGATTTTCCATAATGTTGGTTTAGTAATTACAGATGAACAACATCGATTTGGTGTGAAT
CAACGCCAGCTTTTAAGAGAAAAAGGTGCAATGACGAATGTGTTATTTATGACAGCAACCCCGATACCAAGAACACTAGC
AATATCAGTTTTTGGTGAGATGGATGTGTCTTCAATTAAACAATTACCAAAAGGTCGTAAACCTATCATTACTACTTGGG
CAAAGCATGAGCAATACGATAAAGTTTTGATGCAAATGACCTCAGAGTTGAAAAAAGGTCGTCAAGCATATGTCATTTGC
CCGCTTATAGAAAGTTCTGAGCATCTCGAAGATGTTCAAAATGTTGTCGCATTGTACGAGTCTTTACAACAGAATTATGG
TGTTTCCCGTGTAGGGTTATTGCATGGTAAGTTATCTGCCGATGAAAAAGATGAAGTTATGCAAAAGTTTAGCAATCATG
AGATAGATGTTTTAGTTTCTACTACTGTTGTTGAAGTAGGTGTTAATGTACCGAATGCAACTTTTATGATGATTTATGAT
GCGGATCGCTTTGGATTATCAACTTTACATCAGTTACGCGGTCGTGTAGGTAGAAGTGACCAGCAAAGTTACTGTGTTTT
AATTGCATCCCCTAAAACAGAAACAGGAATTGAAAGAATGACAATTATGACACAAACAACGGATGGATTTGAATTGAGTG
AACGAGACTTAGAAATGCGTGGTCCTGGAGATTTCTTTGGTGTTAAACAAAGTGGATTGCCAGATTTCTTAGTTGCCAAT
TTAGTTGAAGATTATCGTATGTTAGAAGTTGCTCGTGATGAAGCAGCTGAACTTATTCAATCTGGCGTATTCTTTGAAAA
TACGTATCAACATTTACGTCATTTTGTTGAAGAAAATTTATTACATCGTAGTTTTGACTAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(464-579)

DEAD/DEAH box helicase (DEAD)

(267-422)

RecG wedge domain (RecG_wedge)

(16-175)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(606-663)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Bacillus subtilis subsp. subtilis str. 168

53.073

97.23

0.516
  recG/mmsA Streptococcus pneumoniae R6

50.388

94.023

0.474
  recG/mmsA Streptococcus pneumoniae R36A

50.388

94.023

0.474
  recG Neisseria meningitidis strain C311

40

97.668

0.391