Detailed information NTG0181428

Bioinformatically predicted

Overview

• Name: comFA
• Type: Machinery gene
• Locus tag: BSA171_RS03195
• Genome accession: NZ_CP015611
• Coordinates: 636044..637441 (+)
• Length: 465 a.a.
• NCBI ID: WP_269199592.1
• Uniprot ID: -
• Organism: Bacillus safensis strain U17-1
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 631044..642441

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BSA171_RS03175 (BSA171_03135)	-	632046..632714 (-)	669	WP_012011434.1	YigZ family protein	-
BSA171_RS03180 (BSA171_03140)	degS	632936..634111 (+)	1176	WP_003213166.1	sensor histidine kinase	Regulator
BSA171_RS03185 (BSA171_03145)	degU	634176..634865 (+)	690	WP_008348273.1	two-component system response regulator DegU	Regulator
BSA171_RS03190 (BSA171_03150)	-	635081..635923 (+)	843	WP_041088038.1	DegV family protein	-
BSA171_RS03195 (BSA171_03155)	comFA	636044..637441 (+)	1398	WP_269199592.1	DEAD/DEAH box helicase	Machinery gene
BSA171_RS03200 (BSA171_03160)	-	637491..637784 (+)	294	WP_041088040.1	late competence development ComFB family protein	-
BSA171_RS03205 (BSA171_03165)	comFC	637811..638467 (+)	657	WP_231120176.1	ComF family protein	Machinery gene
BSA171_RS03210 (BSA171_03170)	-	638524..638943 (+)	420	WP_075611999.1	TIGR03826 family flagellar region protein	-
BSA171_RS03215 (BSA171_03175)	flgM	639023..639286 (+)	264	WP_075611998.1	flagellar biosynthesis anti-sigma factor FlgM	-
BSA171_RS03220 (BSA171_03180)	-	639305..639787 (+)	483	WP_075611997.1	flagellar protein FlgN	-
BSA171_RS03225 (BSA171_03185)	flgK	639803..641323 (+)	1521	WP_058837539.1	flagellar hook-associated protein FlgK	-
BSA171_RS03230 (BSA171_03190)	flgL	641333..642241 (+)	909	WP_041088047.1	flagellar hook-associated protein FlgL	-

Sequence

Protein

• Length: 465 a.a.
• Molecular weight: 53154.96 Da
• Isoelectric Point: 9.8002

>NTDB_id=181428 BSA171_RS03195 WP_269199592.1 636044..637441(+) (comFA) [Bacillus safensis strain U17-1]
MNMDKAMELMRQLHSRHLLTAETRCPQSNLDWLEEKGLVNRTPAIERKANGFTCCRCGVSHKRYFAHSPCEVCQKDCIYC
RSCIMMGKATECGFLYEWTGPQMVETYRAELTWQGELTKGQKRASEGMIEAIKNKFDLLVWAVCGAGKTEVLFHGIEYAL
NQGMRVCIATPRTDVVLELEPRLRKAFQGMTIAVLYGGSSQRFQIAPLVIATTHQLMRYKNAFDVLIVDEVDAFPYSMDE
RLQFAVLKAMSRNGGVRIYLSATPSKKMTREVSSGKLEAIKIPLRFHKQPLPVPTFHWIGHWKKKLKKNQLPRKVMNWMQ
RHIVNKRRVLLFVPSIATMKKVTKILREHSLNVEGVSADDPDRKQKVQYFRDYEYDVLVTTTILERGVTIPNVQVGVLGS
ESTIFTESALVQISGRVGRHPDYCTGDVFLFHFGLTRSMKQAKKHIVKMNDTAANEFSEKQCGFN

Nucleotide

• Length: 1398 bp

>NTDB_id=181428 BSA171_RS03195 WP_269199592.1 636044..637441(+) (comFA) [Bacillus safensis strain U17-1]
TTGAATATGGACAAAGCAATGGAACTAATGCGGCAGCTGCATTCACGCCATCTGCTCACCGCCGAAACAAGGTGCCCACA
GTCCAATTTGGATTGGTTGGAGGAGAAGGGCTTAGTCAATCGAACACCTGCCATTGAGAGGAAAGCAAATGGTTTTACAT
GCTGCCGGTGCGGTGTATCACACAAGCGGTACTTTGCTCACTCTCCATGTGAAGTGTGTCAAAAGGATTGTATATACTGT
AGATCATGCATCATGATGGGAAAAGCAACTGAATGTGGGTTTCTTTATGAATGGACAGGTCCACAAATGGTAGAAACATA
TCGAGCTGAATTAACATGGCAGGGAGAGCTGACTAAAGGGCAAAAAAGAGCGTCAGAAGGAATGATTGAAGCTATCAAAA
ACAAATTTGATCTACTTGTTTGGGCGGTTTGCGGAGCAGGGAAAACGGAGGTGCTTTTTCACGGAATCGAATATGCGTTA
AATCAAGGAATGAGAGTCTGTATTGCGACACCTAGAACAGATGTTGTGCTTGAACTCGAACCACGACTTAGAAAAGCATT
TCAAGGGATGACAATAGCCGTACTTTATGGAGGCAGTTCTCAAAGGTTTCAGATTGCACCGCTTGTGATCGCCACAACCC
ATCAGCTGATGAGGTACAAAAATGCATTTGATGTCCTCATTGTAGATGAAGTCGATGCCTTCCCTTATTCAATGGATGAG
CGTCTCCAATTTGCTGTTCTAAAGGCGATGAGTAGGAACGGAGGGGTTAGGATTTATTTAAGTGCGACACCCTCTAAAAA
AATGACGAGAGAGGTTTCTAGTGGAAAACTGGAAGCGATAAAAATTCCTCTGCGTTTTCATAAACAACCATTACCCGTAC
CGACCTTTCATTGGATTGGACATTGGAAAAAGAAATTAAAAAAGAATCAGCTGCCCCGTAAAGTGATGAATTGGATGCAG
AGACATATTGTAAATAAAAGAAGAGTATTACTTTTTGTTCCTTCAATTGCTACCATGAAGAAGGTAACGAAGATTCTTCG
AGAACACTCCTTAAACGTGGAGGGAGTATCTGCTGATGATCCAGATAGGAAACAAAAGGTTCAGTACTTTAGAGATTACG
AATACGATGTACTAGTTACAACCACTATTCTAGAAAGAGGCGTAACCATTCCAAATGTTCAAGTCGGGGTTTTAGGTTCG
GAATCTACTATTTTTACAGAGAGTGCACTTGTTCAGATTTCTGGAAGAGTAGGCAGACACCCGGATTATTGTACAGGAGA
CGTTTTCCTTTTTCATTTTGGTTTAACGAGAAGTATGAAACAAGCAAAGAAGCATATCGTAAAAATGAATGATACGGCTG
CAAATGAGTTTTCTGAAAAACAGTGTGGGTTCAACTAA

Domains

Predicted by InterproScan.

• Type III restriction enzyme, res subunit (ResIII) (116-265)

• Helicase conserved C-terminal domain (Helicase_C) (323-420)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFA	Bacillus subtilis subsp. subtilis str. 168	51.868	97.849	0.508
comFA/cflA	Streptococcus pneumoniae Rx1	38.549	94.839	0.366
comFA/cflA	Streptococcus pneumoniae D39	38.549	94.839	0.366
comFA/cflA	Streptococcus pneumoniae R6	38.549	94.839	0.366
comFA/cflA	Streptococcus pneumoniae TIGR4	38.497	94.409	0.363