Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   BSA171_RS03185 Genome accession   NZ_CP015611
Coordinates   634176..634865 (+) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus safensis strain U17-1     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 629176..639865
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSA171_RS03165 (BSA171_03125) - 629867..630934 (+) 1068 WP_034660156.1 glycosyltransferase family 4 protein -
  BSA171_RS03170 (BSA171_03130) - 630970..632061 (-) 1092 WP_041088032.1 LCP family protein -
  BSA171_RS03175 (BSA171_03135) - 632046..632714 (-) 669 WP_012011434.1 YigZ family protein -
  BSA171_RS03180 (BSA171_03140) degS 632936..634111 (+) 1176 WP_003213166.1 sensor histidine kinase Regulator
  BSA171_RS03185 (BSA171_03145) degU 634176..634865 (+) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  BSA171_RS03190 (BSA171_03150) - 635081..635923 (+) 843 WP_041088038.1 DegV family protein -
  BSA171_RS03195 (BSA171_03155) comFA 636044..637441 (+) 1398 WP_269199592.1 DEAD/DEAH box helicase Machinery gene
  BSA171_RS03200 (BSA171_03160) - 637491..637784 (+) 294 WP_041088040.1 late competence development ComFB family protein -
  BSA171_RS03205 (BSA171_03165) comFC 637811..638467 (+) 657 WP_231120176.1 ComF family protein Machinery gene
  BSA171_RS03210 (BSA171_03170) - 638524..638943 (+) 420 WP_075611999.1 TIGR03826 family flagellar region protein -
  BSA171_RS03215 (BSA171_03175) flgM 639023..639286 (+) 264 WP_075611998.1 flagellar biosynthesis anti-sigma factor FlgM -
  BSA171_RS03220 (BSA171_03180) - 639305..639787 (+) 483 WP_075611997.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=181427 BSA171_RS03185 WP_008348273.1 634176..634865(+) (degU) [Bacillus safensis strain U17-1]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=181427 BSA171_RS03185 WP_008348273.1 634176..634865(+) (degU) [Bacillus safensis strain U17-1]
GTGACTAAAGTAAATATTGTAATTATTGATGACCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGTGACGAAGCTGCACGTATCGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTTGAGGCTACAAAGCAGCTTGTTGAGCTTTATCCCGAATCAAAAGTC
ATTATTCTATCTATTCATGATGATGAAAACTATGTAACACATGCATTGAAAACAGGAGCGAGAGGCTACCTGTTAAAAGA
AATGGATGCAGACACACTTATCGAAGCAGTGAAAGTTGTAGCTGACGGAGGCTCTTATTTACATCCGAAAGTCACTCATA
ATTTAGTAAATGAATTCCGACGCCTAGCAACTAGTGGCGTTTCAGCACATCCACAGCACGAGGTATATCCTGAAATTCGC
AGACCACTTCATATCTTAACTAGACGTGAATGTGAAGTTCTTCAAATGTTAGCTGACGGAAAGAGCAACAGAGGAATCGG
TGAATCGCTCTTTATTAGTGAGAAAACAGTCAAAAACCACGTGAGTAACATTTTGCAAAAAATGAATGTAAACGACCGTA
CACAAGCTGTTGTTGTAGCTATTAAAAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996

Multiple sequence alignment