Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   BSA41_RS14880 Genome accession   NZ_CP015610
Coordinates   2822778..2823467 (-) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus safensis strain U41     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2817778..2828467
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSA41_RS14845 (BSA41_14530) - 2817856..2818338 (-) 483 WP_075611997.1 flagellar protein FlgN -
  BSA41_RS14850 (BSA41_14535) flgM 2818357..2818620 (-) 264 WP_075611998.1 flagellar biosynthesis anti-sigma factor FlgM -
  BSA41_RS14855 (BSA41_14540) - 2818700..2819119 (-) 420 WP_075611999.1 TIGR03826 family flagellar region protein -
  BSA41_RS14860 (BSA41_14545) comFC 2819176..2819832 (-) 657 WP_231120176.1 ComF family protein Machinery gene
  BSA41_RS14865 (BSA41_14550) - 2819859..2820152 (-) 294 WP_041088040.1 late competence development ComFB family protein -
  BSA41_RS14870 (BSA41_14555) comFA 2820202..2821599 (-) 1398 WP_269199592.1 DEAD/DEAH box helicase Machinery gene
  BSA41_RS14875 (BSA41_14560) - 2821720..2822562 (-) 843 WP_041088038.1 DegV family protein -
  BSA41_RS14880 (BSA41_14565) degU 2822778..2823467 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  BSA41_RS14885 (BSA41_14570) degS 2823532..2824707 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  BSA41_RS14890 (BSA41_14575) - 2824929..2825597 (+) 669 WP_012011434.1 YigZ family protein -
  BSA41_RS14895 (BSA41_14580) - 2825582..2826673 (+) 1092 WP_041088032.1 LCP family protein -
  BSA41_RS14900 (BSA41_14585) - 2826709..2827776 (-) 1068 WP_034660156.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=181405 BSA41_RS14880 WP_008348273.1 2822778..2823467(-) (degU) [Bacillus safensis strain U41]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=181405 BSA41_RS14880 WP_008348273.1 2822778..2823467(-) (degU) [Bacillus safensis strain U41]
GTGACTAAAGTAAATATTGTAATTATTGATGACCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGTGACGAAGCTGCACGTATCGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTTGAGGCTACAAAGCAGCTTGTTGAGCTTTATCCCGAATCAAAAGTC
ATTATTCTATCTATTCATGATGATGAAAACTATGTAACACATGCATTGAAAACAGGAGCGAGAGGCTACCTGTTAAAAGA
AATGGATGCAGACACACTTATCGAAGCAGTGAAAGTTGTAGCTGACGGAGGCTCTTATTTACATCCGAAAGTCACTCATA
ATTTAGTAAATGAATTCCGACGCCTAGCAACTAGTGGCGTTTCAGCACATCCACAGCACGAGGTATATCCTGAAATTCGC
AGACCACTTCATATCTTAACTAGACGTGAATGTGAAGTTCTTCAAATGTTAGCTGACGGAAAGAGCAACAGAGGAATCGG
TGAATCGCTCTTTATTAGTGAGAAAACAGTCAAAAACCACGTGAGTAACATTTTGCAAAAAATGAATGTAAACGACCGTA
CACAAGCTGTTGTTGTAGCTATTAAAAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996

Multiple sequence alignment