Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   BSA41_RS14870 Genome accession   NZ_CP015610
Coordinates   2820202..2821599 (-) Length   465 a.a.
NCBI ID   WP_269199592.1    Uniprot ID   -
Organism   Bacillus safensis strain U41     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2815202..2826599
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSA41_RS14835 (BSA41_14520) flgL 2815402..2816310 (-) 909 WP_041088047.1 flagellar hook-associated protein FlgL -
  BSA41_RS14840 (BSA41_14525) flgK 2816320..2817840 (-) 1521 WP_058837539.1 flagellar hook-associated protein FlgK -
  BSA41_RS14845 (BSA41_14530) - 2817856..2818338 (-) 483 WP_075611997.1 flagellar protein FlgN -
  BSA41_RS14850 (BSA41_14535) flgM 2818357..2818620 (-) 264 WP_075611998.1 flagellar biosynthesis anti-sigma factor FlgM -
  BSA41_RS14855 (BSA41_14540) - 2818700..2819119 (-) 420 WP_075611999.1 TIGR03826 family flagellar region protein -
  BSA41_RS14860 (BSA41_14545) comFC 2819176..2819832 (-) 657 WP_231120176.1 ComF family protein Machinery gene
  BSA41_RS14865 (BSA41_14550) - 2819859..2820152 (-) 294 WP_041088040.1 late competence development ComFB family protein -
  BSA41_RS14870 (BSA41_14555) comFA 2820202..2821599 (-) 1398 WP_269199592.1 DEAD/DEAH box helicase Machinery gene
  BSA41_RS14875 (BSA41_14560) - 2821720..2822562 (-) 843 WP_041088038.1 DegV family protein -
  BSA41_RS14880 (BSA41_14565) degU 2822778..2823467 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  BSA41_RS14885 (BSA41_14570) degS 2823532..2824707 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  BSA41_RS14890 (BSA41_14575) - 2824929..2825597 (+) 669 WP_012011434.1 YigZ family protein -

Sequence

Protein


Download         Length: 465 a.a.        Molecular weight: 53154.96 Da        Isoelectric Point: 9.8002

>NTDB_id=181404 BSA41_RS14870 WP_269199592.1 2820202..2821599(-) (comFA) [Bacillus safensis strain U41]
MNMDKAMELMRQLHSRHLLTAETRCPQSNLDWLEEKGLVNRTPAIERKANGFTCCRCGVSHKRYFAHSPCEVCQKDCIYC
RSCIMMGKATECGFLYEWTGPQMVETYRAELTWQGELTKGQKRASEGMIEAIKNKFDLLVWAVCGAGKTEVLFHGIEYAL
NQGMRVCIATPRTDVVLELEPRLRKAFQGMTIAVLYGGSSQRFQIAPLVIATTHQLMRYKNAFDVLIVDEVDAFPYSMDE
RLQFAVLKAMSRNGGVRIYLSATPSKKMTREVSSGKLEAIKIPLRFHKQPLPVPTFHWIGHWKKKLKKNQLPRKVMNWMQ
RHIVNKRRVLLFVPSIATMKKVTKILREHSLNVEGVSADDPDRKQKVQYFRDYEYDVLVTTTILERGVTIPNVQVGVLGS
ESTIFTESALVQISGRVGRHPDYCTGDVFLFHFGLTRSMKQAKKHIVKMNDTAANEFSEKQCGFN

Nucleotide


Download         Length: 1398 bp        

>NTDB_id=181404 BSA41_RS14870 WP_269199592.1 2820202..2821599(-) (comFA) [Bacillus safensis strain U41]
TTGAATATGGACAAAGCAATGGAACTAATGCGGCAGCTGCATTCACGCCATCTGCTCACCGCCGAAACAAGGTGCCCACA
GTCCAATTTGGATTGGTTGGAGGAGAAGGGCTTAGTCAATCGAACACCTGCCATTGAGAGGAAAGCAAATGGTTTTACAT
GCTGCCGGTGCGGTGTATCACACAAGCGGTACTTTGCTCACTCTCCATGTGAAGTGTGTCAAAAGGATTGTATATACTGT
AGATCATGCATCATGATGGGAAAAGCAACTGAATGTGGGTTTCTTTATGAATGGACAGGTCCACAAATGGTAGAAACATA
TCGAGCTGAATTAACATGGCAGGGAGAGCTGACTAAAGGGCAAAAAAGAGCGTCAGAAGGAATGATTGAAGCTATCAAAA
ACAAATTTGATCTACTTGTTTGGGCGGTTTGCGGAGCAGGGAAAACGGAGGTGCTTTTTCACGGAATCGAATATGCGTTA
AATCAAGGAATGAGAGTCTGTATTGCGACACCTAGAACAGATGTTGTGCTTGAACTCGAACCACGACTTAGAAAAGCATT
TCAAGGGATGACAATAGCCGTACTTTATGGAGGCAGTTCTCAAAGGTTTCAGATTGCACCGCTTGTGATCGCCACAACCC
ATCAGCTGATGAGGTACAAAAATGCATTTGATGTCCTCATTGTAGATGAAGTCGATGCCTTCCCTTATTCAATGGATGAG
CGTCTCCAATTTGCTGTTCTAAAGGCGATGAGTAGGAACGGAGGGGTTAGGATTTATTTAAGTGCGACACCCTCTAAAAA
AATGACGAGAGAGGTTTCTAGTGGAAAACTGGAAGCGATAAAAATTCCTCTGCGTTTTCATAAACAACCATTACCCGTAC
CGACCTTTCATTGGATTGGACATTGGAAAAAGAAATTAAAAAAGAATCAGCTGCCCCGTAAAGTGATGAATTGGATGCAG
AGACATATTGTAAATAAAAGAAGAGTATTACTTTTTGTTCCTTCAATTGCTACCATGAAGAAGGTAACGAAGATTCTTCG
AGAACACTCCTTAAACGTGGAGGGAGTATCTGCTGATGATCCAGATAGGAAACAAAAGGTTCAGTACTTTAGAGATTACG
AATACGATGTACTAGTTACAACCACTATTCTAGAAAGAGGCGTAACCATTCCAAATGTTCAAGTCGGGGTTTTAGGTTCG
GAATCTACTATTTTTACAGAGAGTGCACTTGTTCAGATTTCTGGAAGAGTAGGCAGACACCCGGATTATTGTACAGGAGA
CGTTTTCCTTTTTCATTTTGGTTTAACGAGAAGTATGAAACAAGCAAAGAAGCATATCGTAAAAATGAATGATACGGCTG
CAAATGAGTTTTCTGAAAAACAGTGTGGGTTCAACTAA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(116-265)

Helicase conserved C-terminal domain (Helicase_C)

(323-420)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

51.868

97.849

0.508
  comFA/cflA Streptococcus pneumoniae Rx1

38.549

94.839

0.366
  comFA/cflA Streptococcus pneumoniae D39

38.549

94.839

0.366
  comFA/cflA Streptococcus pneumoniae R6

38.549

94.839

0.366
  comFA/cflA Streptococcus pneumoniae TIGR4

38.497

94.409

0.363

Multiple sequence alignment