Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   A7J50_RS16980 Genome accession   NZ_CP015600
Coordinates   3797507..3799732 (-) Length   741 a.a.
NCBI ID   WP_064452868.1    Uniprot ID   A0A172Z3M7
Organism   Pseudomonas antarctica strain PAMC 27494     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3792507..3804732
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7J50_RS16945 (A7J50_3401) murB 3792877..3793896 (-) 1020 WP_064452862.1 UDP-N-acetylmuramate dehydrogenase -
  A7J50_RS16950 (A7J50_3402) - 3793893..3794357 (-) 465 WP_064452863.1 low molecular weight protein-tyrosine-phosphatase -
  A7J50_RS16955 (A7J50_3403) kdsB 3794357..3795121 (-) 765 WP_064452864.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  A7J50_RS16960 (A7J50_3404) - 3795118..3795303 (-) 186 WP_003174668.1 Trm112 family protein -
  A7J50_RS16965 (A7J50_3405) lpxK 3795327..3796337 (-) 1011 WP_064452865.1 tetraacyldisaccharide 4'-kinase -
  A7J50_RS16970 (A7J50_3406) - 3796337..3796765 (-) 429 WP_064452866.1 ExbD/TolR family protein -
  A7J50_RS16975 (A7J50_3407) exbB 3796762..3797397 (-) 636 WP_064452867.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  A7J50_RS16980 (A7J50_3408) comA 3797507..3799732 (-) 2226 WP_064452868.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  A7J50_RS16985 (A7J50_3409) - 3799868..3800389 (+) 522 WP_053256801.1 DUF2062 domain-containing protein -
  A7J50_RS16990 (A7J50_3410) - 3800386..3801744 (-) 1359 WP_064452869.1 sensor histidine kinase -
  A7J50_RS16995 (A7J50_3411) - 3801731..3802459 (-) 729 WP_064452870.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 79992.79 Da        Isoelectric Point: 10.8898

>NTDB_id=181283 A7J50_RS16980 WP_064452868.1 3797507..3799732(-) (comA) [Pseudomonas antarctica strain PAMC 27494]
MRTGMFALGLGLLALRFLPALPPTAWLLAILVLALMLLPFRTYPLAFFLLGLSWACISAQWALNDRLKPALDGQARWVEG
RVIGLPQQTSSGVRFELADGRSRSARLPKRIRVSWQGGPPVNSGERWRLALTLKRPSGLLNFHGFDYEAWLLAQRIGATG
SVKDGQRLAPARNAWRDSVRQRLKTVDAQGREAGLAALVLGDGSGLATEDWRVLQDTGTVHLLVISGQHIGLLAGLIYGL
VAGLARYGCWPRALPWLPWACGLGFAAALGYGLLAGFGVPVQRACVMVGLVLLWRLRFRHLGVWWPLLLALDGVLVLEPL
ASLQPGFWLSFAAVAVLVLAFSGRLGPWSIWQAWTRPQWLIAIGLFPVLLVLGLPISLSAPVANLFAVPWISLVVLPLAL
LGTLLLAVPLVGEGLLWLAGGALDGLFRGLTLLAGLRSAWVPAEVPVGYWLLSAVGAVLLLLPKGVPFRLLGWPLLMLAI
FPPRALVPHGQVEVLQLDVGQGQAVILRTRNHAMLYDAGPRSGAADLGARVVLPSLQKLGVGALDLMVISHAHADHAGGA
TAVARALAVGRVVGGESAGLPAFLDTQPCLSGEQWEWDGVSFELWQWPGATSSNPKSCVLRVHAQGEGLLLTGDIDQAAE
KAFLTSPLAVQTDWLQAPHHGSRSSSSWRFLQRLAPRSVLISRGRGNAFGHPHPQVMERYQALGSRVYDSAEQGAVRLQL
GTFQPPDVARSQRRFWREALP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=181283 A7J50_RS16980 WP_064452868.1 3797507..3799732(-) (comA) [Pseudomonas antarctica strain PAMC 27494]
ATGAGAACAGGCATGTTCGCACTCGGGCTTGGATTACTTGCGCTGCGATTTCTACCGGCACTGCCGCCGACTGCATGGCT
GCTGGCCATTTTGGTGCTTGCGTTGATGCTGTTGCCGTTTCGCACCTACCCACTGGCGTTCTTCCTGCTGGGCCTGAGCT
GGGCCTGCATCAGCGCGCAATGGGCGTTGAATGATCGCCTCAAGCCGGCGCTGGACGGGCAGGCGCGCTGGGTAGAGGGC
CGTGTGATTGGGTTGCCACAGCAAACGAGCAGCGGCGTACGCTTCGAATTGGCCGACGGCCGGTCGCGTAGCGCTCGGTT
ACCCAAGCGCATCCGGGTGTCCTGGCAGGGTGGCCCGCCGGTAAACAGCGGCGAGCGCTGGCGGCTGGCGCTCACGTTGA
AGCGGCCTTCGGGGCTGCTTAATTTTCATGGCTTTGACTATGAGGCCTGGTTGCTGGCCCAGCGTATTGGTGCCACCGGC
TCGGTGAAAGATGGCCAGCGCCTGGCGCCGGCTCGCAATGCCTGGCGCGACAGCGTCCGGCAGCGCTTGAAAACAGTCGA
TGCTCAAGGTCGCGAGGCGGGCTTGGCGGCGTTGGTACTGGGCGATGGCTCGGGGCTGGCGACCGAGGATTGGCGGGTGT
TGCAAGACACCGGAACCGTGCATCTGCTGGTGATTTCCGGTCAGCACATCGGCTTGCTGGCGGGTTTGATCTACGGCCTG
GTGGCCGGTCTGGCACGCTACGGTTGCTGGCCCCGAGCCTTGCCGTGGCTGCCGTGGGCGTGCGGCCTGGGGTTTGCCGC
CGCGCTCGGTTATGGCCTGCTGGCGGGGTTCGGTGTACCGGTGCAGCGGGCCTGCGTGATGGTCGGGCTGGTATTGCTGT
GGCGTCTGCGTTTTCGGCATTTAGGCGTCTGGTGGCCGTTATTGCTCGCCCTCGATGGCGTGCTGGTGCTCGAGCCGTTG
GCCAGTTTGCAGCCGGGGTTCTGGTTGTCGTTTGCAGCCGTGGCGGTGCTGGTTCTGGCGTTCAGCGGGCGCTTGGGCCC
GTGGAGTATCTGGCAGGCCTGGACTCGCCCCCAATGGTTGATAGCCATCGGTTTGTTTCCGGTATTGCTGGTGCTGGGTT
TGCCCATCAGCCTCAGCGCGCCGGTTGCCAATCTCTTTGCCGTGCCGTGGATCAGCCTGGTGGTGTTGCCATTGGCACTG
CTGGGGACCTTGCTTCTGGCGGTGCCGTTAGTGGGAGAGGGCTTATTGTGGTTGGCCGGTGGAGCGCTTGATGGCCTTTT
CAGGGGTTTGACGCTTTTAGCGGGGCTGCGCTCGGCCTGGGTGCCTGCCGAGGTGCCTGTGGGGTATTGGTTATTAAGCG
CTGTGGGCGCGGTGTTATTGCTCTTGCCCAAAGGCGTACCGTTTCGGCTGCTGGGCTGGCCGTTGCTGATGCTGGCAATC
TTTCCGCCCCGGGCGCTGGTGCCACATGGGCAGGTGGAGGTGCTGCAACTGGATGTCGGCCAGGGGCAAGCGGTGATCCT
GCGCACGCGCAATCACGCAATGCTCTACGACGCAGGGCCGCGCTCGGGGGCGGCGGATCTCGGTGCGCGGGTGGTCTTGC
CTTCGCTGCAAAAGCTCGGGGTAGGGGCGCTGGACCTGATGGTGATCAGTCACGCCCACGCTGACCATGCCGGCGGTGCA
ACCGCTGTCGCCCGTGCGCTTGCGGTCGGGCGGGTCGTCGGCGGAGAGTCCGCAGGGCTGCCGGCATTTCTCGATACGCA
GCCTTGCCTCAGTGGTGAGCAATGGGAGTGGGATGGCGTGTCGTTTGAACTGTGGCAATGGCCTGGCGCCACGAGCAGCA
ATCCGAAATCCTGCGTATTGCGTGTACACGCCCAGGGCGAAGGCCTGTTGCTGACGGGGGATATCGATCAAGCGGCTGAA
AAGGCCTTCCTCACTTCGCCATTGGCGGTGCAGACGGATTGGCTGCAAGCGCCGCACCATGGCAGTCGCAGCTCCTCATC
CTGGCGGTTTCTGCAACGGCTTGCGCCCAGGTCAGTGCTGATTTCACGCGGGCGTGGCAACGCATTTGGTCATCCCCACC
CACAGGTAATGGAGCGTTATCAAGCGTTGGGCAGCCGAGTCTACGACAGCGCGGAACAAGGAGCCGTACGTCTGCAACTG
GGTACCTTCCAACCACCGGATGTTGCTCGTAGTCAACGCCGATTCTGGCGCGAGGCATTACCGTAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-462)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-666)

Domain of unknown function (DUF4131) (DUF4131)

(19-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A172Z3M7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.501

97.031

0.587
  comA Ralstonia pseudosolanacearum GMI1000

34.799

100

0.374

Multiple sequence alignment