Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   A7J50_RS16975 Genome accession   NZ_CP015600
Coordinates   3796762..3797397 (-) Length   211 a.a.
NCBI ID   WP_064452867.1    Uniprot ID   -
Organism   Pseudomonas antarctica strain PAMC 27494     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3791762..3802397
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7J50_RS16940 (A7J50_3400) - 3792143..3792814 (+) 672 WP_064452861.1 Bax inhibitor-1/YccA family protein -
  A7J50_RS16945 (A7J50_3401) murB 3792877..3793896 (-) 1020 WP_064452862.1 UDP-N-acetylmuramate dehydrogenase -
  A7J50_RS16950 (A7J50_3402) - 3793893..3794357 (-) 465 WP_064452863.1 low molecular weight protein-tyrosine-phosphatase -
  A7J50_RS16955 (A7J50_3403) kdsB 3794357..3795121 (-) 765 WP_064452864.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  A7J50_RS16960 (A7J50_3404) - 3795118..3795303 (-) 186 WP_003174668.1 Trm112 family protein -
  A7J50_RS16965 (A7J50_3405) lpxK 3795327..3796337 (-) 1011 WP_064452865.1 tetraacyldisaccharide 4'-kinase -
  A7J50_RS16970 (A7J50_3406) - 3796337..3796765 (-) 429 WP_064452866.1 ExbD/TolR family protein -
  A7J50_RS16975 (A7J50_3407) exbB 3796762..3797397 (-) 636 WP_064452867.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  A7J50_RS16980 (A7J50_3408) comA 3797507..3799732 (-) 2226 WP_064452868.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  A7J50_RS16985 (A7J50_3409) - 3799868..3800389 (+) 522 WP_053256801.1 DUF2062 domain-containing protein -
  A7J50_RS16990 (A7J50_3410) - 3800386..3801744 (-) 1359 WP_064452869.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23025.18 Da        Isoelectric Point: 6.8771

>NTDB_id=181282 A7J50_RS16975 WP_064452867.1 3796762..3797397(-) (exbB) [Pseudomonas antarctica strain PAMC 27494]
MWELVKSGGWMMLPIIMSSIAALGIVAERLWTLRASRITPEHLLGQVWGWIKNKQLDKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHEMERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDFVEGRA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=181282 A7J50_RS16975 WP_064452867.1 3796762..3797397(-) (exbB) [Pseudomonas antarctica strain PAMC 27494]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATTATCATGAGCTCCATCGCCGCACTTGGCATCGTTGC
CGAACGCCTGTGGACCCTGCGCGCCAGCCGAATAACGCCTGAGCATCTGCTGGGGCAAGTCTGGGGCTGGATCAAGAACA
AGCAGTTGGATAAAGAAAAGCTCAAGGAGTTACGGGCCAACTCGCCTTTAGGTGAAATCCTTGCTGCCGGCCTCGCCAAC
TCCAAGCATGGTCGAGAGATCATGAAAGAGTGCATCGAGGAGGCCGCTGCCCGGGTCATCCATGAAATGGAGCGCTATAT
CAATGCGCTTGGCACCATTGCGGCCATGGCACCGTTGCTCGGCCTGTTGGGTACGGTGCTGGGCATGATCGATATTTTCA
GCTCGTTCATGGGGTCGGGCATGACCACTAACGCCGCCGTGCTGGCGGGCGGTATCTCCAAGGCGTTGATTACCACGGCT
GCGGGCCTGATGGTCGGCATCCCTTCGGTATTTTTCCACCGTTTCCTGCAACGTCGCATCGATGAGCTGGTGGTCGGTAT
GGAGCAGGAAGCCATTAAGCTGGTCGAAGTGGTGCAGGGCGATCGTGATGTCGATTTCGTCGAGGGCCGAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

83.412

100

0.834

Multiple sequence alignment