Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   A3K93_RS10935 Genome accession   NZ_CP015594
Coordinates   2266068..2266553 (-) Length   161 a.a.
NCBI ID   WP_269465702.1    Uniprot ID   -
Organism   Acinetobacter sp. NCu2D-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 2265338..2265736 2266068..2266553 flank 332


Gene organization within MGE regions


Location: 2265338..2266553
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A3K93_RS10925 (A3K93_10925) tnpA 2265338..2265736 (+) 399 WP_067727883.1 IS200/IS605 family transposase -
  A3K93_RS10930 (A3K93_10930) - 2265889..2266074 (-) 186 Protein_2104 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  A3K93_RS10935 (A3K93_10935) comE 2266068..2266553 (-) 486 WP_269465702.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 17955.46 Da        Isoelectric Point: 7.8105

>NTDB_id=181251 A3K93_RS10935 WP_269465702.1 2266068..2266553(-) (comE) [Acinetobacter sp. NCu2D-2]
MTSVKEYMMQKQSLGFTLVELMIVVVILAMFAAIAIPSYQSYTRRVAASQVEQEMLRISNLLERHKARSFSYQNFATTTA
TSPANATGSTIKYNIEIFDADDTDSMLTDANASGRNWVMRALSTDNKNFSYLLTSTGMRCKNKTLANISFENCGTVGSEP
W

Nucleotide


Download         Length: 486 bp        

>NTDB_id=181251 A3K93_RS10935 WP_269465702.1 2266068..2266553(-) (comE) [Acinetobacter sp. NCu2D-2]
ATGACCAGCGTTAAGGAGTATATGATGCAAAAACAATCCTTAGGATTTACTTTGGTTGAACTGATGATAGTGGTGGTGAT
TTTAGCTATGTTTGCAGCTATTGCGATTCCATCCTATCAAAGTTATACCCGACGAGTTGCTGCCAGTCAGGTTGAACAGG
AAATGTTACGAATCTCTAACTTATTAGAGCGGCATAAAGCACGAAGTTTTTCGTACCAGAATTTTGCAACTACTACGGCG
ACGAGTCCTGCTAATGCTACAGGAAGTACGATTAAGTACAATATTGAAATTTTTGATGCAGACGATACAGATTCGATGCT
TACCGATGCAAATGCATCGGGTCGTAACTGGGTCATGCGTGCTTTGAGTACGGACAATAAAAATTTCTCTTATTTACTGA
CGAGCACAGGCATGCGCTGTAAGAATAAGACACTTGCTAATATTTCATTTGAAAATTGTGGTACTGTCGGGAGCGAACCA
TGGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(13-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Acinetobacter baylyi ADP1

45.349

100

0.484
  pilY2 Acinetobacter baumannii D1279779

41.104

100

0.416

Multiple sequence alignment