Detailed information
Bioinformatically predicted
Overview
| Name | comF | Type | Machinery gene |
| Locus tag | A3K93_RS10615 | Genome accession | NZ_CP015594 |
| Coordinates | 2207917..2208552 (+) | Length | 211 a.a. |
| NCBI ID | WP_067731201.1 | Uniprot ID | A0A172YRW7 |
| Organism | Acinetobacter sp. NCu2D-2 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 2205885..2227797 | 2207917..2208552 | within | 0 |
Gene organization within MGE regions
Location: 2205885..2227797
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A3K93_RS10610 (A3K93_10610) | recG | 2205885..2207930 (+) | 2046 | WP_067731200.1 | ATP-dependent DNA helicase RecG | - |
| A3K93_RS10615 (A3K93_10615) | comF | 2207917..2208552 (+) | 636 | WP_067731201.1 | phosphoribosyltransferase family protein | Machinery gene |
| A3K93_RS10620 (A3K93_10620) | - | 2208554..2208955 (-) | 402 | WP_067731202.1 | NUDIX domain-containing protein | - |
| A3K93_RS10625 (A3K93_10625) | - | 2208981..2209571 (-) | 591 | WP_067731203.1 | TIGR00730 family Rossman fold protein | - |
| A3K93_RS10630 (A3K93_10630) | - | 2209725..2210738 (+) | 1014 | WP_067731204.1 | CorA family divalent cation transporter | - |
| A3K93_RS10635 (A3K93_10635) | - | 2210868..2211155 (-) | 288 | WP_067731205.1 | STAS domain-containing protein | - |
| A3K93_RS10640 (A3K93_10640) | - | 2211171..2211797 (-) | 627 | WP_067731728.1 | ABC transporter substrate-binding protein | - |
| A3K93_RS10645 (A3K93_10645) | - | 2211815..2212486 (-) | 672 | WP_067731206.1 | outer membrane lipid asymmetry maintenance protein MlaD | - |
| A3K93_RS10650 (A3K93_10650) | mlaE | 2212486..2213265 (-) | 780 | WP_067731207.1 | lipid asymmetry maintenance ABC transporter permease subunit MlaE | - |
| A3K93_RS10655 (A3K93_10655) | - | 2213262..2214080 (-) | 819 | WP_067731208.1 | ABC transporter ATP-binding protein | - |
| A3K93_RS10660 (A3K93_10660) | - | 2214472..2216271 (-) | 1800 | WP_067731209.1 | DEAD/DEAH box helicase | - |
| A3K93_RS10665 (A3K93_10665) | - | 2216802..2217632 (-) | 831 | WP_067731210.1 | inositol monophosphatase family protein | - |
| A3K93_RS10670 (A3K93_10670) | dxs | 2217753..2219657 (-) | 1905 | WP_067731211.1 | 1-deoxy-D-xylulose-5-phosphate synthase | - |
| A3K93_RS10675 (A3K93_10675) | ribA | 2219966..2220568 (+) | 603 | WP_067731212.1 | GTP cyclohydrolase II | - |
| A3K93_RS10680 (A3K93_10680) | hemN | 2220722..2222095 (-) | 1374 | WP_067731213.1 | oxygen-independent coproporphyrinogen III oxidase | - |
| A3K93_RS10685 (A3K93_10685) | hemF | 2222323..2223267 (+) | 945 | WP_067731214.1 | oxygen-dependent coproporphyrinogen oxidase | - |
| A3K93_RS10690 (A3K93_10690) | - | 2223429..2223635 (+) | 207 | WP_067731215.1 | hypothetical protein | - |
| A3K93_RS10695 (A3K93_10695) | aroE | 2223727..2224515 (+) | 789 | WP_067731216.1 | shikimate dehydrogenase | - |
| A3K93_RS10700 (A3K93_10700) | - | 2224893..2226716 (+) | 1824 | WP_067731217.1 | acyl-CoA dehydrogenase C-terminal domain-containing protein | - |
| A3K93_RS10705 (A3K93_10705) | - | 2226835..2227797 (-) | 963 | WP_067729673.1 | IS30 family transposase | - |
Sequence
Protein
Download Length: 211 a.a. Molecular weight: 24187.24 Da Isoelectric Point: 8.8658
>NTDB_id=181250 A3K93_RS10615 WP_067731201.1 2207917..2208552(+) (comF) [Acinetobacter sp. NCu2D-2]
MPMFNLLQTAQTWLRHLQPCQLCHADYQTHYALCQDCWNSLPWSRTVIQRQALDIHIACDYAYPMDRLIQLFKYEQKLHL
QSILAGSLLSLRLPKVSAIVPMPISTERIIERGYNQSLVLAKHIAKHLNVPVWQPITRRAQHSQKGLSRLERIEDIDSQF
EINNPSKLCYRRVLIIDDVVTTGSSIRALSDQLKLLGCTHIHAACIAGAKI
MPMFNLLQTAQTWLRHLQPCQLCHADYQTHYALCQDCWNSLPWSRTVIQRQALDIHIACDYAYPMDRLIQLFKYEQKLHL
QSILAGSLLSLRLPKVSAIVPMPISTERIIERGYNQSLVLAKHIAKHLNVPVWQPITRRAQHSQKGLSRLERIEDIDSQF
EINNPSKLCYRRVLIIDDVVTTGSSIRALSDQLKLLGCTHIHAACIAGAKI
Nucleotide
Download Length: 636 bp
>NTDB_id=181250 A3K93_RS10615 WP_067731201.1 2207917..2208552(+) (comF) [Acinetobacter sp. NCu2D-2]
ATGCCTATGTTTAATCTGCTGCAAACAGCGCAGACTTGGCTCAGACATTTACAGCCATGTCAGCTTTGCCATGCAGATTA
TCAAACACACTATGCACTCTGTCAGGACTGCTGGAACAGTTTGCCTTGGTCAAGAACAGTTATCCAACGACAAGCACTCG
ATATTCATATTGCCTGTGACTATGCCTATCCGATGGATCGACTCATTCAATTATTTAAATATGAACAAAAACTACATTTG
CAGTCGATTTTGGCTGGGAGTTTACTGAGCTTAAGGTTACCCAAAGTCAGCGCGATCGTCCCCATGCCAATCTCAACAGA
ACGTATCATTGAGCGTGGTTATAATCAATCCTTAGTGTTAGCTAAGCATATAGCGAAGCACTTAAATGTTCCGGTGTGGC
AACCAATTACACGTCGCGCACAACATTCACAAAAAGGTTTAAGCCGACTCGAGCGAATTGAAGATATTGATTCCCAATTT
GAGATCAATAATCCATCTAAACTGTGTTATCGCCGTGTGCTGATTATTGATGATGTCGTGACTACAGGCAGTTCGATCCG
CGCACTCAGCGATCAACTTAAACTACTTGGCTGCACGCATATACATGCAGCCTGTATCGCTGGTGCAAAAATCTGA
ATGCCTATGTTTAATCTGCTGCAAACAGCGCAGACTTGGCTCAGACATTTACAGCCATGTCAGCTTTGCCATGCAGATTA
TCAAACACACTATGCACTCTGTCAGGACTGCTGGAACAGTTTGCCTTGGTCAAGAACAGTTATCCAACGACAAGCACTCG
ATATTCATATTGCCTGTGACTATGCCTATCCGATGGATCGACTCATTCAATTATTTAAATATGAACAAAAACTACATTTG
CAGTCGATTTTGGCTGGGAGTTTACTGAGCTTAAGGTTACCCAAAGTCAGCGCGATCGTCCCCATGCCAATCTCAACAGA
ACGTATCATTGAGCGTGGTTATAATCAATCCTTAGTGTTAGCTAAGCATATAGCGAAGCACTTAAATGTTCCGGTGTGGC
AACCAATTACACGTCGCGCACAACATTCACAAAAAGGTTTAAGCCGACTCGAGCGAATTGAAGATATTGATTCCCAATTT
GAGATCAATAATCCATCTAAACTGTGTTATCGCCGTGTGCTGATTATTGATGATGTCGTGACTACAGGCAGTTCGATCCG
CGCACTCAGCGATCAACTTAAACTACTTGGCTGCACGCATATACATGCAGCCTGTATCGCTGGTGCAAAAATCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comF | Acinetobacter baumannii strain A118 |
57.005 |
98.104 |
0.559 |
| comF | Acinetobacter baumannii D1279779 |
56.522 |
98.104 |
0.555 |