Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   A3K93_RS04515 Genome accession   NZ_CP015594
Coordinates   979040..979747 (+) Length   235 a.a.
NCBI ID   WP_067729333.1    Uniprot ID   A0A172YMW0
Organism   Acinetobacter sp. NCu2D-2     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 974040..984747
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A3K93_RS04505 (A3K93_04505) - 976274..978412 (+) 2139 WP_101494818.1 TonB-dependent receptor -
  A3K93_RS04510 (A3K93_04510) - 978469..978891 (-) 423 WP_067729331.1 OsmC family protein -
  A3K93_RS04515 (A3K93_04515) crp 979040..979747 (+) 708 WP_067729333.1 cAMP-activated global transcriptional regulator CRP Regulator
  A3K93_RS04520 (A3K93_04520) - 979902..980951 (+) 1050 WP_067731671.1 NADP(H)-dependent aldo-keto reductase -
  A3K93_RS04525 (A3K93_04525) clpB 981192..983771 (+) 2580 WP_067729335.1 ATP-dependent chaperone ClpB -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26420.98 Da        Isoelectric Point: 4.5374

>NTDB_id=181237 A3K93_RS04515 WP_067729333.1 979040..979747(+) (crp) [Acinetobacter sp. NCu2D-2]
MTSNFSQLSTDALSPGQLPDSVKALLKRAYINRYPKRTTIIDAGSESKSLYLILKGSVSIILREDDEREIVVAYLNAGDF
FGEMGLFESNPQRTAEVRTRDVCEIAEITYENFHELSKQYPDLSYAVFAQLVRRLKNTTRKVTDLAFIDVSGRIARCLID
LSAQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEEQGMIETDGKAILIFDASLEQAEVDGDDDFDDE

Nucleotide


Download         Length: 708 bp        

>NTDB_id=181237 A3K93_RS04515 WP_067729333.1 979040..979747(+) (crp) [Acinetobacter sp. NCu2D-2]
ATGACTTCAAATTTTTCACAACTAAGCACAGATGCACTTTCTCCGGGTCAACTTCCTGATTCGGTCAAAGCATTATTAAA
ACGTGCATATATTAATCGTTATCCTAAACGTACAACGATCATCGATGCTGGTTCAGAGTCAAAATCTTTATATTTAATTC
TGAAGGGGTCAGTATCAATTATTCTTCGTGAAGACGATGAGCGTGAAATTGTCGTTGCTTATTTGAATGCCGGTGACTTC
TTTGGGGAAATGGGGTTATTTGAGTCAAATCCGCAGCGTACTGCAGAAGTGCGTACCCGTGATGTATGTGAAATTGCAGA
AATCACTTATGAAAACTTCCATGAGCTAAGTAAACAATACCCAGACTTGAGCTATGCAGTATTTGCTCAACTCGTGCGCC
GTTTGAAAAATACCACACGTAAAGTAACTGACCTTGCATTTATTGATGTATCCGGTCGTATTGCGCGTTGCTTAATCGAC
TTGTCGGCACAACCTGAAGCAATGATTCTTCCAAATGGCCGTCAAATTCGCATTACACGTCAAGAAATTGGTCGTATAGT
GGGTTGTTCACGCGAGATGGTCGGTCGTGTCTTAAAAACACTTGAAGAGCAAGGCATGATTGAAACCGATGGTAAAGCAA
TCTTGATCTTTGATGCTTCGCTAGAACAAGCTGAAGTTGATGGTGATGACGACTTTGATGATGAATAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)

Bacterial regulatory proteins, crp family (Crp)

(176-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A172YMW0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

91.064

100

0.911
  crp Vibrio cholerae strain A1552

47.805

87.234

0.417
  crp Haemophilus influenzae Rd KW20

48.718

82.979

0.404

Multiple sequence alignment