Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   BWR56_RS04685 Genome accession   NZ_CP019562
Coordinates   963167..966442 (+) Length   1091 a.a.
NCBI ID   WP_076984547.1    Uniprot ID   -
Organism   Streptococcus oralis strain S.MIT/ORALIS-351     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 958167..971442
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BWR56_RS04655 (BWR56_0921) - 958499..959377 (+) 879 WP_049505803.1 sensor histidine kinase -
  BWR56_RS04660 (BWR56_0922) - 959417..960169 (-) 753 WP_049505804.1 ABC transporter permease -
  BWR56_RS04665 (BWR56_0923) - 960180..961088 (-) 909 WP_049505805.1 ATP-binding cassette domain-containing protein -
  BWR56_RS04670 (BWR56_0924) - 961231..962040 (-) 810 WP_076984544.1 Cof-type HAD-IIB family hydrolase -
  BWR56_RS04675 (BWR56_0925) - 962187..962648 (+) 462 WP_076984545.1 MarR family winged helix-turn-helix transcriptional regulator -
  BWR56_RS04680 (BWR56_0926) - 962641..963060 (+) 420 WP_076984546.1 EVE domain-containing protein -
  BWR56_RS04685 (BWR56_0927) rexB 963167..966442 (+) 3276 WP_076984547.1 ATP-dependent nuclease subunit B Machinery gene
  BWR56_RS04690 (BWR56_0928) rexA 966439..970092 (+) 3654 WP_076984548.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  BWR56_RS04695 (BWR56_0929) - 970110..971288 (+) 1179 WP_076984549.1 hypothetical protein -

Sequence

Protein


Download         Length: 1091 a.a.        Molecular weight: 124677.19 Da        Isoelectric Point: 5.6366

>NTDB_id=180945 BWR56_RS04685 WP_076984547.1 963167..966442(+) (rexB) [Streptococcus oralis strain S.MIT/ORALIS-351]
MKLLYTDIRTSLTEILTREAEELVATGKRVFYIAPNSLSFEKERAVLECLSQQASFAITVTRFAQMARYLVLNDLPTKTS
LDDIGLGMAFYKCLAELDPKELRVYGAIKQDPQFIQQLIELYHEMTTAQMNFLDLESLSDEDKRADLLLIFEKVTAYLNQ
SQLAQGSQLSHLIEAIENDKVSSDFSHIALVIDGFTRFSAEEEHVVDLLQRKGVEIVIGAYASKKAYTSPFTEGNLYQAS
VEFLHHLGAKYQTVAQDRSQTHAYMDSFDKASRLLESSYDFSELTLDVDEKDRENLQIWSCLTQKEELELVARSIRQKLH
DHPELSYKNFRILLGDVASYQLSLKTIFDQYQIPFYLGRSESMAHHPLTQYVESILRLKRYRFRQEDLINLLRTGLYTDL
SQADIDAFEQYLRYLGINGLPAFQQTFTKSHHGKFDLERLNAIRLRVLTPLETLLASRKQKAENLVQKWSTFLKNAALSK
QMQDLTATMEALEQERQAEVWKAFYHVLEQFATVFDGSQVSLEDFLALLHSGMTLSQYRTIPATVDTVLVQSYDLIAPLT
SDFVYAIGLTQDHLPKIAQNTSLLTDEERQSLNQATDDGAQLLIASSENLKKNRYTMLSLVNAARKQLILSAPSLLNENE
SKESAYLQELVSFGFNRTEKKIHHKGLSKEDMSSYHSLLSSLVAYHQQGETSDREQDLTFVKVLARVMGKKLDQKGLTNP
AIPTSPSSKPLEKETLQALYPADKEFYLSTSGLTEFYRNQYSYFLRYVLGLQEELRLRPDARSHGNFLHSIFERALKLPT
ENPFDQRLEQAIQETSQEREFEAIYQESLEAQFTKEVLHDVARTTGHILRHNPAIETIQEEATFGGKDQAFIQLENGRSV
HVRGKVDRIDRLKADGALGVVDYKSSLTQFQFPHFFNGLNSQLPTYLAALKGEGEQNFFGAMYLEMAEPVQSLLAVKNLA
GAVVEASKSMKYQGLFLEKESSYLGDFYNKNKANQLTDEEFQLLLDYNAHLYKKAAEKILEGQFAINPYTENGRSIAPYV
QQHQAITGFEANYHLGQARFLEKLDLADGKRLVGEKLKQAWFEKMREELNQ

Nucleotide


Download         Length: 3276 bp        

>NTDB_id=180945 BWR56_RS04685 WP_076984547.1 963167..966442(+) (rexB) [Streptococcus oralis strain S.MIT/ORALIS-351]
ATGAAATTACTTTATACTGATATTCGGACTTCTTTGACAGAAATCTTGACCAGAGAGGCGGAAGAGCTGGTTGCTACTGG
TAAGCGGGTTTTCTACATTGCTCCCAACTCTCTTTCATTTGAAAAGGAACGCGCCGTGCTGGAATGCTTGTCCCAGCAGG
CTTCTTTTGCGATTACCGTCACGCGCTTTGCTCAGATGGCTCGTTACCTGGTTTTAAATGACTTGCCTACAAAGACCAGT
CTTGATGACATCGGCCTTGGGATGGCCTTTTATAAATGTCTTGCTGAACTTGATCCCAAAGAGTTACGAGTTTATGGTGC
TATTAAACAAGACCCTCAGTTTATCCAGCAGTTGATTGAACTTTATCATGAGATGACGACTGCTCAGATGAACTTTTTAG
ACTTAGAAAGTTTGAGTGATGAGGACAAGCGGGCAGATTTACTCTTGATTTTTGAGAAAGTGACTGCCTATCTCAATCAA
AGCCAGTTGGCTCAGGGAAGTCAATTGTCCCATTTGATTGAGGCTATTGAGAATGATAAGGTAAGTAGTGATTTCAGTCA
TATTGCCTTAGTCATTGACGGATTTACTCGTTTTTCTGCTGAGGAAGAACATGTAGTGGATCTGCTCCAGCGTAAAGGTG
TTGAGATTGTCATTGGTGCTTATGCAAGCAAGAAGGCCTATACCAGTCCGTTCACTGAAGGAAATCTCTACCAAGCCAGT
GTGGAATTTCTTCATCATTTAGGTGCTAAATACCAAACGGTTGCTCAAGACCGTTCTCAGACTCATGCGTACATGGATAG
TTTTGACAAGGCCTCTCGTTTGCTAGAGTCTTCTTATGACTTTTCAGAACTCACTTTGGATGTAGATGAGAAGGACCGTG
AAAATCTGCAAATCTGGTCTTGCTTGACACAAAAAGAAGAGTTGGAGTTGGTAGCCCGCAGCATCCGTCAGAAATTACAT
GACCATCCAGAACTGAGTTACAAGAATTTCCGTATTTTGCTGGGAGATGTAGCTTCTTATCAGTTATCACTAAAAACTAT
TTTTGACCAGTACCAGATTCCGTTCTATCTTGGTAGAAGTGAATCCATGGCTCATCATCCCTTAACCCAGTATGTCGAAT
CTATTTTGCGTTTGAAACGCTACCGTTTTCGTCAGGAGGATTTGATTAATCTCCTCAGAACTGGTCTGTATACTGACCTT
AGCCAAGCGGATATTGATGCTTTTGAGCAATATCTCCGCTATCTTGGCATCAATGGCTTGCCAGCTTTTCAGCAGACCTT
CACTAAATCCCACCATGGAAAATTCGATTTGGAACGTTTGAACGCCATTCGTCTGCGAGTTCTGACGCCACTTGAAACCT
TATTAGCCAGTCGAAAACAAAAGGCTGAAAATCTCGTGCAAAAGTGGAGTACATTTCTAAAAAACGCTGCTTTAAGCAAG
CAGATGCAAGACTTGACAGCTACTATGGAAGCTCTAGAACAGGAAAGACAAGCTGAAGTTTGGAAAGCCTTTTATCATGT
TTTAGAACAATTTGCGACAGTTTTTGATGGTTCACAAGTTAGTCTGGAGGACTTCCTAGCCTTGCTCCACTCAGGGATGA
CTTTATCTCAGTATCGCACTATTCCAGCAACAGTAGACACTGTTCTGGTGCAGAGTTACGATTTGATCGCACCACTGACT
TCTGACTTTGTCTACGCTATTGGGCTGACTCAGGATCATTTGCCAAAAATTGCGCAAAACACCAGCCTGTTAACAGATGA
AGAAAGACAAAGCCTAAATCAAGCGACTGATGATGGAGCGCAATTACTGATTGCAAGCAGTGAAAACCTCAAGAAAAATC
GCTATACCATGCTTTCCTTGGTTAATGCTGCCCGTAAACAATTGATTTTGTCAGCACCCAGTCTTCTCAATGAAAACGAG
AGTAAGGAATCGGCCTATCTTCAGGAACTGGTGAGTTTTGGATTTAATCGGACAGAGAAGAAGATTCATCACAAAGGTTT
GTCTAAGGAAGATATGAGTTCTTATCACAGTCTCTTGTCTAGCTTAGTTGCCTATCACCAACAGGGCGAGACGAGTGATA
GGGAGCAAGATTTGACCTTTGTCAAGGTTCTGGCGCGTGTGATGGGTAAAAAGCTAGATCAAAAAGGCCTTACAAATCCA
GCTATCCCAACAAGTCCAAGTAGCAAACCATTAGAGAAAGAGACCTTGCAGGCTCTCTATCCAGCTGACAAAGAGTTTTA
CCTGTCTACCTCTGGTTTGACGGAGTTTTACCGTAACCAATACAGTTATTTCCTCCGTTATGTCTTAGGTTTGCAGGAAG
AATTGCGCCTTCGTCCAGATGCTCGCAGTCACGGGAATTTCTTGCATAGTATTTTTGAACGTGCCTTGAAACTGCCTACT
GAAAATCCGTTTGATCAGCGTTTGGAACAAGCTATTCAAGAAACCAGCCAAGAACGCGAATTTGAAGCTATTTATCAGGA
AAGTTTGGAAGCCCAGTTTACCAAGGAAGTTCTGCATGATGTCGCGCGAACTACGGGCCACATCCTTCGTCATAATCCAG
CTATCGAAACCATCCAAGAGGAGGCAACATTTGGTGGTAAGGACCAGGCCTTTATTCAATTGGAAAATGGTCGCAGTGTT
CATGTGCGAGGCAAGGTTGACCGTATTGACCGTTTGAAAGCTGATGGAGCGCTAGGAGTGGTGGACTACAAGTCTAGTCT
GACTCAGTTCCAGTTTCCTCATTTCTTTAATGGGCTCAATTCCCAACTGCCAACCTATCTTGCCGCCCTTAAAGGAGAAG
GAGAGCAGAACTTTTTCGGAGCTATGTACCTAGAAATGGCTGAACCTGTCCAATCCTTATTAGCAGTTAAAAATCTTGCA
GGAGCAGTAGTAGAAGCCAGCAAGTCTATGAAATACCAAGGGCTCTTTTTAGAAAAAGAAAGCAGTTATTTAGGCGATTT
TTACAATAAAAACAAGGCCAATCAGCTGACAGACGAGGAATTCCAGCTCTTACTAGACTATAATGCCCATCTTTACAAGA
AGGCAGCTGAAAAGATTTTAGAAGGTCAGTTCGCCATCAATCCATACACAGAGAACGGAAGAAGTATTGCCCCGTACGTT
CAGCAACACCAAGCCATTACAGGATTTGAAGCCAATTACCACTTGGGTCAAGCTCGTTTCCTAGAAAAGTTAGACCTAGC
GGATGGCAAGCGCCTAGTAGGAGAAAAGCTCAAGCAAGCTTGGTTTGAAAAAATGAGAGAGGAGTTGAATCAATGA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(748-1030)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

89.551

100

0.896

Multiple sequence alignment