Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   A4210_RS00005 Genome accession   NZ_CP015569
Coordinates   2530409..323 (+) Length   167 a.a.
NCBI ID   WP_005719438.1    Uniprot ID   A0A9X3URY5
Organism   Pasteurella multocida strain USDA-ARS-USMARC-60385     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2525409..5323
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  - ssb 2530409..323 (+) -2530085 - - Machinery gene

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18673.68 Da        Isoelectric Point: 5.3353

>NTDB_id=180945 A4210_RS00005 WP_005719438.1 2530409..323(+) (ssb) [Pasteurella multocida strain USDA-ARS-USMARC-60385]
MAGVNKVIIVGNLGNDPEIRTMPNGEAVANISVATSESWIDKNTNERREVTEWHRIVFYRRQAEVAGEYLRKGSKVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVLQMLDSRNERQQTGGYAPQTASPQYNAPTGGYGAQPSRPATKPAPQNEPPMDMGFE
EDNIPF

Nucleotide


Download         Length: 0 bp        

>NTDB_id=180945 A4210_RS00005 WP_005719438.1 2530409..323(+) (ssb) [Pasteurella multocida strain USDA-ARS-USMARC-60385]

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

69.231

100

0.759
  ssb Vibrio cholerae strain A1552

53.591

100

0.584
  ssb Neisseria meningitidis MC58

44.068

100

0.47
  ssb Neisseria gonorrhoeae MS11

44.068

100

0.47

Multiple sequence alignment