Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaR   Type   Regulator
Locus tag   BZY78_RS12820 Genome accession   NZ_CP019560
Coordinates   2492051..2492710 (+) Length   219 a.a.
NCBI ID   WP_001221502.1    Uniprot ID   B7LGG8
Organism   Escherichia coli strain KSC1031     
Function   repress competence development; post-transcriptional repression of CSP production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2487051..2497710
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BZY78_RS12795 (BZY78_13015) plsC 2487198..2487935 (-) 738 WP_000965712.1 1-acylglycerol-3-phosphate O-acyltransferase -
  BZY78_RS12800 (BZY78_13025) parC 2488168..2490426 (-) 2259 WP_001281881.1 DNA topoisomerase IV subunit A -
  BZY78_RS12810 (BZY78_13035) ygiV 2490972..2491454 (-) 483 WP_057696284.1 GyrI-like domain-containing protein -
  BZY78_RS12815 (BZY78_13040) ygiW 2491507..2491899 (-) 393 WP_000712658.1 OB fold stress tolerance protein YgiW -
  BZY78_RS12820 (BZY78_13045) ciaR 2492051..2492710 (+) 660 WP_001221502.1 quorum sensing response regulator transcription factor QseB Regulator
  BZY78_RS12825 (BZY78_13050) qseC 2492707..2494056 (+) 1350 WP_000673354.1 quorum sensing histidine kinase QseC -
  BZY78_RS12830 (BZY78_13055) ygiZ 2494102..2494434 (-) 333 WP_000912120.1 DUF2645 family protein -
  BZY78_RS12835 (BZY78_13060) mdaB 2494753..2495334 (+) 582 WP_000065430.1 NADPH:quinone oxidoreductase MdaB -
  BZY78_RS12840 (BZY78_13065) ygiN 2495365..2495679 (+) 315 WP_000958598.1 putative quinol monooxygenase -
  BZY78_RS12845 (BZY78_13070) parE 2495727..2497619 (-) 1893 WP_000195296.1 DNA topoisomerase IV subunit B -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 24745.66 Da        Isoelectric Point: 6.6543

>NTDB_id=180848 BZY78_RS12820 WP_001221502.1 2492051..2492710(+) (ciaR) [Escherichia coli strain KSC1031]
MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDILREWREKGQREPVLILTA
RDALEERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLEL
LMRNAGRVLPRKLIEEKLYTWDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGEK

Nucleotide


Download         Length: 660 bp        

>NTDB_id=180848 BZY78_RS12820 WP_001221502.1 2492051..2492710(+) (ciaR) [Escherichia coli strain KSC1031]
ATGCGAATTTTACTGATAGAAGATGACATGCTGATTGGCGACGGCATCAAAACGGGCCTTAGTAAAATGGGTTTTAGCGT
CGACTGGTTTACACAAGGTCGTCAGGGAAAAGAGGCGCTTTATAGCGCGCCTTATGATGCGGTGATCCTGGATTTAACCT
TACCAGGCATGGATGGTCGCGATATTTTGCGCGAATGGCGAGAAAAAGGTCAGCGTGAGCCGGTACTGATCCTGACCGCG
CGCGATGCGCTGGAGGAACGTGTAGAAGGGCTGCGTCTGGGAGCTGACGATTATCTGTGTAAACCTTTTGCGTTGATAGA
AGTCGCCGCCAGGCTGGAAGCTCTGATGCGCCGAACCAACGGCCAGGCCAGCAACGAGCTGCGCCACGGTAACGTCATGC
TCGACCCCGGCAAACGTATCGCCACGCTGGCTGGCGAACCCTTAACACTGAAACCAAAAGAATTTGCCCTGCTGGAATTA
CTGATGCGTAACGCTGGTCGGGTACTGCCGCGCAAACTGATTGAAGAGAAACTGTATACCTGGGACGAAGAGGTCACCAG
TAATGCCGTTGAAGTGCATGTGCATCATCTGCGACGCAAACTCGGTAGTGATTTTATTCGTACCGTGCATGGTATTGGCT
ACACATTAGGTGAGAAATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(145-216)

Response regulator receiver domain (Response_reg)

(3-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B7LGG8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaR Streptococcus pneumoniae Rx1

38.326

100

0.397
  ciaR Streptococcus pneumoniae D39

38.326

100

0.397
  ciaR Streptococcus pneumoniae R6

38.326

100

0.397
  ciaR Streptococcus pneumoniae TIGR4

38.326

100

0.397
  ciaR Streptococcus mutans UA159

35.874

100

0.365

Multiple sequence alignment