Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   A6M16_RS01170 Genome accession   NZ_CP015557
Coordinates   207480..208193 (+) Length   237 a.a.
NCBI ID   WP_012774930.1    Uniprot ID   A0A142UPI2
Organism   Streptococcus suis strain DN13     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 205137..213811 207480..208193 within 0


Gene organization within MGE regions


Location: 205137..213811
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6M16_RS01160 (A6M16_01160) - 205137..205535 (+) 399 WP_024395184.1 hypothetical protein -
  A6M16_RS01165 (A6M16_01165) treP 205771..207246 (-) 1476 Protein_191 PTS system trehalose-specific EIIBC component -
  A6M16_RS01170 (A6M16_01170) treR 207480..208193 (+) 714 WP_012774930.1 trehalose operon repressor Regulator
  A6M16_RS01175 (A6M16_01175) - 208251..208562 (+) 312 WP_002935948.1 hypothetical protein -
  A6M16_RS01180 (A6M16_01180) - 208559..209107 (+) 549 WP_002935945.1 CvpA family protein -
  A6M16_RS01185 (A6M16_01185) - 209657..211990 (+) 2334 WP_029752765.1 endonuclease MutS2 -
  A6M16_RS01190 (A6M16_01190) - 212156..212536 (+) 381 WP_024389717.1 DUF1310 family protein -
  A6M16_RS11110 (A6M16_01195) - 212543..213333 (+) 791 Protein_197 esterase/lipase family protein -
  A6M16_RS01200 (A6M16_01200) - 213419..213811 (+) 393 WP_014637383.1 DUF1310 family protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27200.07 Da        Isoelectric Point: 6.7422

>NTDB_id=180670 A6M16_RS01170 WP_012774930.1 207480..208193(+) (treR) [Streptococcus suis strain DN13]
MKKYQEIYNDLKEKIRTNVYPAESSLPTEQQLQEIYGVSRDTVRKALAILTEGGLIQKVQGRGSMVLKQEILNFPVSGLT
SYQELTNVLQLSTKTDVVSLDMITVNSSLSHLTGFEPYSKVWKVVRTRSIDGKVSVVDTDYLAVDVVPELTTAIAEKSIY
EYLENKLGLDIAYAQKEITVEPTNREERELMQSKDDYLVLIKSRVYLGDTQQFQYTESKHKIDKFRFVDFARRKHSL

Nucleotide


Download         Length: 714 bp        

>NTDB_id=180670 A6M16_RS01170 WP_012774930.1 207480..208193(+) (treR) [Streptococcus suis strain DN13]
ATGAAAAAATACCAAGAAATTTATAATGACTTAAAAGAAAAAATACGGACAAATGTTTATCCGGCAGAAAGCTCCCTACC
GACAGAACAGCAGCTTCAGGAAATCTATGGTGTTAGTCGTGATACGGTTCGTAAGGCGTTGGCGATTTTGACTGAGGGAG
GTTTGATTCAAAAAGTGCAAGGGCGTGGTTCAATGGTCCTTAAGCAAGAAATTCTCAATTTCCCAGTTTCAGGTTTAACT
TCCTATCAGGAATTAACAAATGTTCTCCAGCTTTCTACCAAGACAGATGTTGTCAGCTTAGATATGATTACCGTTAATAG
TAGCCTTTCGCACTTGACAGGCTTTGAGCCGTATAGCAAGGTGTGGAAAGTTGTCCGTACACGTTCAATTGACGGTAAGG
TCTCCGTTGTGGATACAGATTATCTTGCTGTCGATGTCGTGCCAGAGTTGACAACTGCTATTGCTGAAAAATCCATCTAT
GAATACCTAGAAAATAAGTTAGGCCTTGATATTGCTTATGCACAAAAAGAGATTACGGTAGAGCCGACCAATCGAGAAGA
GCGCGAGCTAATGCAATCGAAGGATGATTATTTGGTCTTGATTAAATCTCGTGTCTATCTCGGTGATACCCAGCAATTCC
AATATACAGAAAGCAAGCATAAAATTGATAAATTCCGCTTTGTAGATTTTGCTCGTAGAAAGCATTCTTTATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(91-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A142UPI2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

52.137

98.734

0.515

Multiple sequence alignment