Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   BZG33_RS03340 Genome accession   NZ_CP019466
Coordinates   564960..565568 (+) Length   202 a.a.
NCBI ID   WP_047921847.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain RIVM0610     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 559960..570568
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BZG33_RS03310 (BZG33_03250) - 560309..560890 (-) 582 WP_003690895.1 superoxide dismutase -
  BZG33_RS03320 (BZG33_03260) dnaB 561054..562457 (+) 1404 WP_012503477.1 replicative DNA helicase -
  BZG33_RS03325 (BZG33_03265) pilH 562714..563376 (+) 663 WP_047916986.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  BZG33_RS03330 (BZG33_03270) pilV/pilI 563408..564022 (+) 615 WP_012503479.1 type IV pilus modification protein PilV Regulator
  BZG33_RS03335 (BZG33_03275) pilJ 564019..564981 (+) 963 WP_047921846.1 PilW family protein Machinery gene
  BZG33_RS03340 (BZG33_03280) pilK 564960..565568 (+) 609 WP_047921847.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  BZG33_RS03345 (BZG33_03285) pilL 565570..566043 (+) 474 WP_012503482.1 PilX family type IV pilin Machinery gene
  BZG33_RS03350 (BZG33_03290) - 566113..566421 (-) 309 WP_003706588.1 AzlD family protein -
  BZG33_RS03355 (BZG33_03295) - 566418..567129 (-) 712 Protein_562 AzlC family ABC transporter permease -
  BZG33_RS03360 (BZG33_03300) dut 567295..567747 (+) 453 WP_003701071.1 dUTP diphosphatase -
  BZG33_RS03365 (BZG33_03305) dapC 567819..569006 (+) 1188 WP_003701073.1 succinyldiaminopimelate transaminase -
  BZG33_RS03370 (BZG33_03310) yaaA 569162..569941 (+) 780 WP_003687925.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 22039.97 Da        Isoelectric Point: 7.5810

>NTDB_id=180617 BZG33_RS03340 WP_047921847.1 564960..565568(+) (pilK) [Neisseria gonorrhoeae strain RIVM0610]
MRKQNALTGIPTSEGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYTA
DSKVTFSENCENGLCTAVNVRTNDANEEAFDNIVVKGKPTVEAVKRSCPAKSGKNSTGLCIDNQGVEYKKGTGNVSKMPR
YIIEYLGVKNGQNVYRVTAKAWGKNANTVVVLQSYVGNNDEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=180617 BZG33_RS03340 WP_047921847.1 564960..565568(+) (pilK) [Neisseria gonorrhoeae strain RIVM0610]
ATGCGCAAACAGAACGCTTTGACAGGAATCCCGACTTCTGAGGGACAGAGGGGGTTCGCACTGTTTATCGTGCTGATGGT
GATGATAGTCGTGGCCTTTTTGGTTGTAACTGCCGCCCAGTCCTACAATACCGAACAGAGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGAGGGAAGGCGAATTTCAGGTTTTGGATTTGGAATATACTGCG
GATAGTAAGGTTACATTTAGCGAAAACTGTGAAAACGGCCTGTGTACCGCAGTGAATGTACGGACAAATGATGCTAATGA
AGAGGCTTTTGACAATATCGTGGTGAAAGGCAAGCCCACCGTTGAGGCGGTGAAGCGTTCTTGCCCTGCAAAGTCTGGCA
AAAATTCTACCGGCCTGTGCATTGACAATCAGGGAGTGGAATATAAGAAAGGTACGGGAAACGTCAGCAAAATGCCGCGC
TATATTATCGAATATTTAGGCGTGAAGAACGGACAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAA
TACCGTGGTCGTCCTTCAATCTTATGTAGGCAATAATGATGAGCAATAA

Domains

Predicted by InterProScan.

Type IV pilus assembly protein PilX C-term (PilX)

(92-197)

PilX N-terminal (PilX_N)

(17-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

92.611

100

0.931

Multiple sequence alignment