Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   BZG33_RS03325 Genome accession   NZ_CP019466
Coordinates   562714..563376 (+) Length   220 a.a.
NCBI ID   WP_047916986.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain RIVM0610     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 557714..568376
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BZG33_RS03290 (BZG33_03230) cysT 557891..558720 (-) 830 Protein_551 sulfate ABC transporter permease subunit CysT -
  BZG33_RS03295 (BZG33_03235) - 558906..559238 (+) 333 WP_003687908.1 hypothetical protein -
  BZG33_RS03300 (BZG33_03240) - 559568..560077 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  BZG33_RS03310 (BZG33_03250) - 560309..560890 (-) 582 WP_003690895.1 superoxide dismutase -
  BZG33_RS03320 (BZG33_03260) dnaB 561054..562457 (+) 1404 WP_012503477.1 replicative DNA helicase -
  BZG33_RS03325 (BZG33_03265) pilH 562714..563376 (+) 663 WP_047916986.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  BZG33_RS03330 (BZG33_03270) pilV/pilI 563408..564022 (+) 615 WP_012503479.1 type IV pilus modification protein PilV Regulator
  BZG33_RS03335 (BZG33_03275) pilJ 564019..564981 (+) 963 WP_047921846.1 PilW family protein Machinery gene
  BZG33_RS03340 (BZG33_03280) pilK 564960..565568 (+) 609 WP_047921847.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  BZG33_RS03345 (BZG33_03285) pilL 565570..566043 (+) 474 WP_012503482.1 PilX family type IV pilin Machinery gene
  BZG33_RS03350 (BZG33_03290) - 566113..566421 (-) 309 WP_003706588.1 AzlD family protein -
  BZG33_RS03355 (BZG33_03295) - 566418..567129 (-) 712 Protein_562 AzlC family ABC transporter permease -
  BZG33_RS03360 (BZG33_03300) dut 567295..567747 (+) 453 WP_003701071.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 24557.00 Da        Isoelectric Point: 9.6166

>NTDB_id=180614 BZG33_RS03325 WP_047916986.1 562714..563376(+) (pilH) [Neisseria gonorrhoeae strain RIVM0610]
MCTRKQQGFTLTELLIVMAIAAIMATIALPNMSGWIASRRIASHAEQVANLLRFSRGEAVRLNLPVYICPVQVKKDGASN
NRCDFSKKGWGMLAFGDKNDNKAYDGDATDVFLRSVVLNDTDDSRINYTFNHIAFGSSQPKADRVVWTFNQNGTFGYLPD
QNLKNNFKFVYSDGYIQIVLTDARAVSDADKKFRSAVVLINSSGRVEVCRKNDTRAVCKH

Nucleotide


Download         Length: 663 bp        

>NTDB_id=180614 BZG33_RS03325 WP_047916986.1 562714..563376(+) (pilH) [Neisseria gonorrhoeae strain RIVM0610]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGCCATCGCAGCCATTATGGCGACGAT
AGCCCTCCCCAATATGAGTGGGTGGATTGCATCACGCCGCATTGCCAGTCACGCGGAGCAGGTTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTGTTCAAGTTAAAAAAGACGGTGCGTCCAAC
AATAGATGTGACTTCAGCAAGAAGGGGTGGGGAATGTTGGCTTTCGGCGACAAAAACGACAATAAGGCATATGACGGCGA
TGCGACGGATGTTTTCCTCCGCAGCGTGGTGTTGAATGATACCGACGACAGCCGGATTAATTACACCTTCAATCATATCG
CTTTCGGTTCGTCTCAGCCGAAAGCCGACCGTGTAGTTTGGACTTTCAACCAAAACGGGACATTCGGCTATTTGCCCGAT
CAGAATCTCAAGAATAATTTCAAATTTGTTTATTCTGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGTTTC
AGATGCCGATAAGAAATTCCGTTCGGCGGTGGTTTTGATTAACAGCAGCGGCAGGGTCGAAGTTTGTCGTAAAAACGATA
CGCGCGCCGTATGCAAACATTAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)

Type II transport protein GspH (GspH)

(44-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

95.455

100

0.955