Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   BXO92_RS07180 Genome accession   NZ_CP019455
Coordinates   1406152..1406784 (+) Length   210 a.a.
NCBI ID   WP_000242755.1    Uniprot ID   A0A1C4FZU4
Organism   Escherichia coli strain FHI_NMBU_03     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1401152..1411784
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BXO92_RS07150 (BXO92_07285) yheS 1401321..1403234 (+) 1914 WP_000634798.1 ABC transporter ATP-binding protein -
  BXO92_RS07155 (BXO92_07290) yheT 1403234..1404256 (+) 1023 WP_000057416.1 hydrolase -
  BXO92_RS07160 (BXO92_07295) yheU 1404250..1404468 (+) 219 WP_000907085.1 YheU family protein -
  BXO92_RS07165 (BXO92_07300) prkB 1404522..1405391 (+) 870 WP_001274684.1 phosphoribulokinase -
  BXO92_RS07170 (BXO92_07305) yhfA 1405446..1405850 (-) 405 WP_001148908.1 OsmC family protein -
  BXO92_RS07180 (BXO92_07315) crp 1406152..1406784 (+) 633 WP_000242755.1 cAMP-activated global transcriptional regulator CRP Regulator
  BXO92_RS07185 (BXO92_07320) yhfK 1406835..1408925 (+) 2091 WP_001298205.1 YccS/YhfK family putative transporter -
  BXO92_RS07190 (BXO92_07325) argD 1408992..1410212 (-) 1221 WP_024222988.1 bifunctional acetylornithine/succinyldiaminopimelate transaminase -
  BXO92_RS07195 (BXO92_07330) pabA 1410298..1410861 (-) 564 WP_000601853.1 aminodeoxychorismate synthase component 2 -
  BXO92_RS07200 (BXO92_07335) fic 1410893..1411495 (-) 603 WP_001280654.1 putative adenosine monophosphate-protein transferase Fic -
  BXO92_RS07205 (BXO92_07340) yhfG 1411485..1411652 (-) 168 WP_000736858.1 YhfG family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23640.43 Da        Isoelectric Point: 8.2710

>NTDB_id=180538 BXO92_RS07180 WP_000242755.1 1406152..1406784(+) (crp) [Escherichia coli strain FHI_NMBU_03]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=180538 BXO92_RS07180 WP_000242755.1 1406152..1406784(+) (crp) [Escherichia coli strain FHI_NMBU_03]
ATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAA
GAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAG
ACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGC
CAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGAT
TCAGGTAAACCCGGACATTCTGATGCGTCTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCA
ACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTGAATCTGGCAAAACAACCGGATGCTATGACTCAC
CCGGACGGTATGCAAATCAAAATTACCCGTCAGGAAATCGGTCAGATTGTCGGCTGTTCTCGTGAAACCGTGGGACGCAT
TCTGAAGATGCTGGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C4FZU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

95.714

100

0.957
  crp Haemophilus influenzae Rd KW20

77.941

97.143

0.757
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment