Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   A2I67_RS00150 Genome accession   NZ_CP015533
Coordinates   30109..30630 (+) Length   173 a.a.
NCBI ID   WP_012664057.1    Uniprot ID   B9DIB9
Organism   Staphylococcus carnosus strain TMW 2.216     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 25109..35630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A2I67_RS00120 (A2I67_00115) - 25643..26410 (-) 768 WP_046099717.1 SDR family NAD(P)-dependent oxidoreductase -
  A2I67_RS00125 (A2I67_00120) argF 26612..27616 (-) 1005 WP_115359484.1 ornithine carbamoyltransferase -
  A2I67_RS00130 (A2I67_00125) - 27857..28207 (-) 351 WP_012664053.1 type II toxin-antitoxin system PemK/MazF family toxin -
  A2I67_RS00135 (A2I67_00130) - 28201..28458 (-) 258 WP_012664054.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein -
  A2I67_RS00140 (A2I67_00135) - 28616..29650 (+) 1035 WP_052719481.1 thermonuclease family protein -
  A2I67_RS00145 (A2I67_00140) rpsF 29791..30087 (+) 297 WP_012664056.1 30S ribosomal protein S6 -
  A2I67_RS00150 (A2I67_00145) ssbA 30109..30630 (+) 522 WP_012664057.1 single-stranded DNA-binding protein Machinery gene
  A2I67_RS00155 (A2I67_00150) rpsR 30687..30929 (+) 243 WP_012664058.1 30S ribosomal protein S18 -
  A2I67_RS00160 (A2I67_00155) - 31225..31443 (+) 219 WP_012664059.1 hypothetical protein -
  A2I67_RS00165 (A2I67_00160) - 31730..32053 (+) 324 WP_012664060.1 antibiotic biosynthesis monooxygenase -
  A2I67_RS00170 (A2I67_00165) - 32514..33107 (+) 594 WP_046100475.1 hypothetical protein -
  A2I67_RS00175 (A2I67_00170) - 33345..33866 (+) 522 Protein_34 histidine phosphatase family protein -
  A2I67_RS00180 (A2I67_00175) - 33976..35142 (-) 1167 WP_103211622.1 ArgE/DapE family deacylase -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 19114.74 Da        Isoelectric Point: 5.2149

>NTDB_id=180453 A2I67_RS00150 WP_012664057.1 30109..30630(+) (ssbA) [Staphylococcus carnosus strain TMW 2.216]
MLNRVVLVGRLTRDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQAENVNNYLFKGSLAGVDGRLQSR
SYENQEGRRIFVTEVVCDSVQFLEPKSQNQRHGGQQSGGGNQFQDYGQSYGGQQQGQNTSSYQNQNSSKSGQSDNPFANA
NGPIDISDDDLPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=180453 A2I67_RS00150 WP_012664057.1 30109..30630(+) (ssbA) [Staphylococcus carnosus strain TMW 2.216]
ATGCTTAACAGAGTTGTATTGGTAGGACGTTTAACTCGAGATCCTGAATACAGAACGACACCCTCAGGCGTAAGTGTAGC
GACTTTTACCCTAGCGGTTAATCGTACGTTTACGAATGCGCAAGGGGAACGTGAAGCAGACTTCATTAACTGTGTTGTTT
TTAGAAAACAAGCAGAGAATGTAAACAATTATTTGTTTAAAGGTAGTCTTGCTGGCGTTGACGGTCGCTTGCAATCACGC
AGTTACGAAAACCAAGAAGGACGTCGTATTTTTGTGACAGAAGTTGTGTGTGACAGTGTCCAATTCCTTGAACCTAAATC
ACAAAACCAACGTCATGGCGGCCAACAATCTGGAGGAGGCAATCAATTCCAAGATTACGGTCAAAGTTACGGTGGACAAC
AACAAGGTCAAAATACGTCATCTTATCAAAACCAAAATTCATCAAAATCTGGACAATCTGATAATCCATTTGCAAATGCA
AACGGACCGATTGATATCAGTGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B9DIB9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

60.894

100

0.63
  ssb Latilactobacillus sakei subsp. sakei 23K

55.747

100

0.561
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.273

63.584

0.364

Multiple sequence alignment